WormBase Model:Picture

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WormBase Models

Curator Comments/Description

"Description" -- for figure legend "Name" -- for actual picture name, that includes the file path. Crop -- this is the picture object lineage. Large figures will be cropped into sections when they represent different data. Pick_me_to_call -- untouched from existing model Expr_pattern -- for linking to Expr_pattern data Remark -- For curator notes Cellular_component -- For linking to a GO term Anatomy_term -- For linking to an Anatomy Object Acknowledgments -- For copyrights and permission acknowledgments "Reference" -- for the source of the picture (WBPaper)

We removed the following tags because they had no associated picture data (checked on WS219):

      RNAi ?RNAi XREF Picture //tag removed 
      Variation ?Variation XREF Picture //tag removed
      Transgene ?Transgene XREF Picture //tag removed

A detailed explanation of the model with the proposed changes can be found on the wiki:

http://wiki.wormbase.org/index.php/Pictures#Picture_Data_Model_Proposal

In order to have an easier tracking of the modifications were thinking to add the following sentence in the CVS log "The tags RNAi, Variation, and Transgene were removed as they had no associated picture data".

Model

OLD:

?Picture Description ?Text
         Pick_me_to_call Text Text
         Expr_pattern ?Expr_pattern XREF Picture
         RNAi ?RNAi XREF Picture                // Lincoln.  krb [010807]
         Variation ?Variation XREF Picture
         Transgene ?Transgene XREF Picture      // Carol.  ar2 [2006-04-21]
         Remark ?Text #Evidence                 //  

NEW:

?Picture Evidence #Evidence
         Description ?Text
         Name UNIQUE Text
         Crop Crop_picture ?Picture XREF Cropped_from
              Cropped_from ?Picture XREF Crop_picture
         Pick_me_to_call Text Text
         Remark ?Text #Evidence
         Depict  Expr_pattern ?Expr_pattern XREF Picture
                 Anatomy ?Anatomy_term XREF Picture
                 Cellular_component ?GO_term XREF Picture
         Acknowledgment Template UNIQUE Text
                        Publication_year UNIQUE Text
                        Article_URL UNIQUE ?Database UNIQUE ?Database_field UNIQUE ?Accession_number
                        Journal_URL UNIQUE ?Database 
                        Publisher_URL UNIQUE ?Database 
                        Person_name UNIQUE Text
         Reference ?Paper XREF Picture
         Contact ?Person

Proposed Changes

Unused tags

RNAi - Removed

Variation - Removed

Transgene - Removed

Remark - Preserved for now.