Difference between revisions of "WormBase Model:Phenotype info"
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== Curator Comments/Description == | == Curator Comments/Description == | ||
| + | Usage hard to work out as tag counts don't work in hashes. | ||
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== Model == | == Model == | ||
<pre> | <pre> | ||
| + | //////////////////////////////////////////// | ||
| + | // | ||
| + | // ?Phenotype_info Class | ||
| + | // | ||
| + | //////////////////////////////////////////// | ||
| + | |||
| + | #Phenotype_info Paper_evidence ?Paper | ||
| + | Person_evidence ?Person | ||
| + | Curator_confirmed ?Person | ||
| + | Remark ?Text #Evidence // specific remarks about the phenotype | ||
| + | Quantity_description ?Text #Evidence //Remark to describe what quantity describes, below | ||
| + | Quantity UNIQUE Int UNIQUE Int #Evidence | ||
| + | Not #Evidence //This is being phased out but is needed for the next phase [06/08/10]. | ||
| + | Anatomy_term ?Anatomy_term #Evidence | ||
| + | Penetrance Incomplete Text #Evidence | ||
| + | Low Text #Evidence | ||
| + | High Text #Evidence | ||
| + | Complete Text #Evidence | ||
| + | Range UNIQUE Int UNIQUE Int #Evidence // Range of penetrance | ||
| + | Recessive #Evidence | ||
| + | Semi_dominant #Evidence | ||
| + | Dominant #Evidence | ||
| + | Haplo_insufficient #Evidence | ||
| + | Caused_by ?Gene #Evidence | ||
| + | Caused_by_other ?Text #Evidence | ||
| + | Loss_of_function UNIQUE Hypomorph #Evidence | ||
| + | Amorph #Evidence | ||
| + | Uncharacterised_loss_of_function #Evidence | ||
| + | Gain_of_function UNIQUE Dominant_negative #Evidence | ||
| + | Hypermorph #Evidence | ||
| + | Neomorph #Evidence | ||
| + | Uncharacterised_gain_of_function #Evidence | ||
| + | Other_allele_type UNIQUE Wild_type #Evidence | ||
| + | Isoallele #Evidence | ||
| + | Mixed #Evidence | ||
| + | Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook | ||
| + | Temperature_sensitive Heat_sensitive Text #Evidence | ||
| + | Cold_sensitive Text #Evidence | ||
| + | Maternal UNIQUE Strictly_maternal #Evidence | ||
| + | With_maternal_effect #Evidence | ||
| + | Paternal #Evidence | ||
| + | Phenotype_assay Life_stage ?Life_stage #Evidence | ||
| + | Strain ?Strain #Evidence | ||
| + | Treatment ?Text #Evidence | ||
| + | Temperature ?Text #Evidence | ||
| + | Genotype ?Text #Evidence | ||
</pre> | </pre> | ||
Revision as of 08:32, 5 October 2010
Curator Comments/Description
Usage hard to work out as tag counts don't work in hashes.
Model
////////////////////////////////////////////
//
// ?Phenotype_info Class
//
////////////////////////////////////////////
#Phenotype_info Paper_evidence ?Paper
Person_evidence ?Person
Curator_confirmed ?Person
Remark ?Text #Evidence // specific remarks about the phenotype
Quantity_description ?Text #Evidence //Remark to describe what quantity describes, below
Quantity UNIQUE Int UNIQUE Int #Evidence
Not #Evidence //This is being phased out but is needed for the next phase [06/08/10].
Anatomy_term ?Anatomy_term #Evidence
Penetrance Incomplete Text #Evidence
Low Text #Evidence
High Text #Evidence
Complete Text #Evidence
Range UNIQUE Int UNIQUE Int #Evidence // Range of penetrance
Recessive #Evidence
Semi_dominant #Evidence
Dominant #Evidence
Haplo_insufficient #Evidence
Caused_by ?Gene #Evidence
Caused_by_other ?Text #Evidence
Loss_of_function UNIQUE Hypomorph #Evidence
Amorph #Evidence
Uncharacterised_loss_of_function #Evidence
Gain_of_function UNIQUE Dominant_negative #Evidence
Hypermorph #Evidence
Neomorph #Evidence
Uncharacterised_gain_of_function #Evidence
Other_allele_type UNIQUE Wild_type #Evidence
Isoallele #Evidence
Mixed #Evidence
Affected_by Molecule ?Molecule #Evidence // ?Molecule model Karen Yook
Temperature_sensitive Heat_sensitive Text #Evidence
Cold_sensitive Text #Evidence
Maternal UNIQUE Strictly_maternal #Evidence
With_maternal_effect #Evidence
Paternal #Evidence
Phenotype_assay Life_stage ?Life_stage #Evidence
Strain ?Strain #Evidence
Treatment ?Text #Evidence
Temperature ?Text #Evidence
Genotype ?Text #Evidence
