WormBase Model:Paper
From WormBaseWiki
Jump to navigationJump to searchCurator Comments/Description
Model
// ?Paper class - krb 040223 // ?Paper class - krb 040223 // ID-based system (WBPaperXXXXXXXX) to allow paper tracking and an associated ?Paper_name class // //////////////////////////////////////////////////////////////////////////////////////////////////////// ?Paper Original_timestamp Datetype // temporary tag in transition period [krb 040223] Name ?Text //used for storing legacy names, like cgc5654 or wm95p426 DB_info Database ?Database ?Database_field ?Accession_number //used for storing PubMed or other database identifiers, for PubMed, Database_field would be PMID History Merged_into UNIQUE ?Paper XREF Acquires_merge Acquires_merge ?Paper XREF Merged_into Status Valid Invalid Erratum_in ?Paper XREF Erratum_for Erratum_for ?Paper XREF Erratum_in Reference Title UNIQUE ?Text Journal UNIQUE ?Text //we are cleaning up Journal names and considering retiring the class Publisher UNIQUE Text Editor ?Text //used for books put in as objects Page UNIQUE Text Volume UNIQUE Text Publication_date UNIQUE ?Text //YYYY-MM-DD or YYYY-MM, replaces DateType which led to erroneous pub dates Contained_in ?Paper XREF Contains // old form Contains ?Paper XREF Contained_in Author ?Author XREF Paper #Affiliation Person ?Person XREF Paper #Evidence Describes_analysis ?Analysis XREF Reference Not_person ?Person XREF Not_Paper #Evidence Affiliation Text // Authors' affiliation if available Brief_citation UNIQUE Text Abstract ?LongText URL Text //will be used for Worm Breeder's Gazette articles and other citations available online but not through PubMed Type Journal_article #Evidence Review #Evidence Comment #Evidence News #Evidence Letter #Evidence Editorial #Evidence Congresses #Evidence Historical_article #Evidence Biography #Evidence Interview #Evidence Lectures #Evidence Interactive_tutorial #Evidence Retracted_publication #Evidence Technical_report #Evidence Directory #Evidence Monograph #Evidence Published_erratum #Evidence Meeting_abstract #Evidence Gazette_article #Evidence Book_chapter #Evidence Book #Evidence Email #Evidence WormBook #Evidence Other #Evidence Refers_to Gene ?Gene XREF Reference #Evidence Allele ?Variation XREF Reference #Evidence Rearrangement ?Rearrangement XREF Reference #Evidence Sequence ?Sequence XREF Reference #Evidence CDS ?CDS XREF Reference #Evidence Transcript ?Transcript XREF Reference #Evidence Strain ?Strain XREF Reference #Evidence Clone ?Clone XREF Reference #Evidence Expr_pattern ?Expr_pattern XREF Reference #Evidence Expr_profile ?Expr_profile XREF Reference #Evidence Cell ?Cell XREF Reference #Evidence Cell_group ?Cell_group XREF Reference #Evidence Life_stage ?Life_stage XREF Reference #Evidence RNAi ?RNAi XREF Reference #Evidence Transgene ?Transgene XREF Reference #Evidence Operon ?Operon XREF Reference #Evidence Expression_cluster ?Expression_cluster XREF Reference #Evidence Feature ?Feature XREF Defined_by_paper // added [030424 dl] Gene_regulation ?Gene_regulation XREF Reference // added [030804 krb] Microarray_experiment ?Microarray_experiment XREF Reference //added for Microarray_experiment model Anatomy_term ?Anatomy_term XREF Reference #Evidence Anatomy_function ?Anatomy_function XREF Reference Antibody ?Antibody XREF Reference #Evidence // added [031120 krb] SAGE_experiment ?SAGE_experiment XREF Reference YH ?YH XREF Reference ?Text Interaction ?Interaction XREF Paper Mass_spec_experiment ?Mass_spec_experiment XREF Reference Curation_pipeline Phenotype2GO Keyword ?Keyword Remark ?Text #Evidence
Proposed Changes
Unused tags
Original_timestamp
Type Directory
Type Email
Refers_to Operon
Refers_to Anatomy_term