Difference between revisions of "WormBase Model:Oligo set"

From WormBaseWiki
Jump to navigationJump to search
(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
 
Line 11: Line 11:
 
== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
////////////////////////////////
 +
//
 +
// ?Oligo_set class
 +
//
 +
////////////////////////////////
 +
 +
?Oligo_set      SMap S_parent UNIQUE Canonical_parent UNIQUE ?Sequence XREF Oligo_set
 +
                Structure Target_exons Int UNIQUE Int
 +
                Microarray_results ?Microarray_results XREF Oligo_set
 +
                Oligo ?Oligo    //used in case oligos are specified
 +
                Overlaps_CDS        ?CDS        XREF Corresponding_oligo_set #Evidence
 +
                Overlaps_transcript ?Transcript XREF Corresponding_oligo_set #Evidence
 +
                Overlaps_pseudogene ?Pseudogene XREF Corresponding_oligo_set #Evidence
 +
                Remark Text    #Evidence
 +
                Type    Affymetrix_microarray_probe
 +
                        WashU_GSC_microarray_probe
 +
                        Agilent_microarray_probe
 +
                        Affymetrix_tiling_array_probe
 +
                Method UNIQUE ?Method
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
 +
==Unused tags==
 +
Affymetrix_tiling_array_probe
 +
 +
Oligo

Latest revision as of 16:03, 4 October 2010

WormBase Models

Curator Comments/Description

Model

////////////////////////////////
//
// ?Oligo_set class
//
////////////////////////////////

?Oligo_set      SMap S_parent UNIQUE Canonical_parent UNIQUE ?Sequence XREF Oligo_set
                Structure Target_exons Int UNIQUE Int
                Microarray_results ?Microarray_results XREF Oligo_set 
                Oligo ?Oligo     //used in case oligos are specified
                Overlaps_CDS        ?CDS        XREF Corresponding_oligo_set #Evidence
                Overlaps_transcript ?Transcript XREF Corresponding_oligo_set #Evidence
                Overlaps_pseudogene ?Pseudogene XREF Corresponding_oligo_set #Evidence
                Remark Text    #Evidence
                Type    Affymetrix_microarray_probe
                        WashU_GSC_microarray_probe
                        Agilent_microarray_probe
                        Affymetrix_tiling_array_probe
                Method UNIQUE ?Method

Proposed Changes

Unused tags

Affymetrix_tiling_array_probe

Oligo