Difference between revisions of "WormBase Model:Motif"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ?Motif Match_sequence UNIQUE Text // Text is the DNA or protein sequence | ||
+ | Num_mismatch UNIQUE Int // Allowed number of mismatches when matching | ||
+ | // (default 0) | ||
+ | Restriction Isoschizomer ?Motif XREF Isoschizomer | ||
+ | Offset UNIQUE Int | ||
+ | Cleavage UNIQUE Text // will show the cleavage points ex: G_ACGT'C | ||
+ | Overhang UNIQUE Int | ||
+ | Company UNIQUE Text | ||
+ | Redundant | ||
+ | Remark ?Text #Evidence | ||
+ | Title ?Text | ||
+ | DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Motif // ID Accession_number | ||
+ | DB_remark ?Text #Evidence | ||
+ | DB_text ?LongText | ||
+ | Web_location ?WWW_server | ||
+ | Substrate UNIQUE DNA | ||
+ | Peptide | ||
+ | Homol DNA_homol ?Sequence XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info | ||
+ | Pep_homol ?Protein XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info | ||
+ | Motif_homol ?Motif XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info | ||
+ | Homol_homol ?Homol_data XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info | ||
+ | GO_term ?GO_term XREF Motif ?GO_code #Evidence | ||
+ | Associated_transposon_family ?Transposon_family XREF Associated_motif // to connect Transposon famillies to Repeat motifs ar2 02-DEC-05 | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | ==Unused tags== | ||
+ | Num_mismatch | ||
+ | |||
+ | Redundant | ||
+ | |||
+ | DB_remark | ||
+ | |||
+ | DB_text | ||
+ | |||
+ | Web_location | ||
+ | |||
+ | Peptide | ||
+ | |||
+ | Motif_homol |
Latest revision as of 15:32, 4 October 2010
Curator Comments/Description
Model
?Motif Match_sequence UNIQUE Text // Text is the DNA or protein sequence Num_mismatch UNIQUE Int // Allowed number of mismatches when matching // (default 0) Restriction Isoschizomer ?Motif XREF Isoschizomer Offset UNIQUE Int Cleavage UNIQUE Text // will show the cleavage points ex: G_ACGT'C Overhang UNIQUE Int Company UNIQUE Text Redundant Remark ?Text #Evidence Title ?Text DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Motif // ID Accession_number DB_remark ?Text #Evidence DB_text ?LongText Web_location ?WWW_server Substrate UNIQUE DNA Peptide Homol DNA_homol ?Sequence XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info Pep_homol ?Protein XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info Motif_homol ?Motif XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info Homol_homol ?Homol_data XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info GO_term ?GO_term XREF Motif ?GO_code #Evidence Associated_transposon_family ?Transposon_family XREF Associated_motif // to connect Transposon famillies to Repeat motifs ar2 02-DEC-05
Proposed Changes
Unused tags
Num_mismatch
Redundant
DB_remark
DB_text
Web_location
Peptide
Motif_homol