Difference between revisions of "WormBase Model:Motif"

From WormBaseWiki
Jump to navigationJump to search
(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
 
Line 11: Line 11:
 
== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
?Motif  Match_sequence  UNIQUE Text    // Text is the DNA or protein sequence
 +
        Num_mismatch UNIQUE Int        // Allowed number of mismatches when matching
 +
                                        // (default 0)
 +
        Restriction    Isoschizomer ?Motif XREF Isoschizomer
 +
                        Offset UNIQUE Int 
 +
                        Cleavage UNIQUE Text  // will show the cleavage points ex: G_ACGT'C
 +
                        Overhang UNIQUE Int
 +
                        Company UNIQUE Text
 +
                        Redundant
 +
        Remark ?Text #Evidence
 +
        Title ?Text
 +
        DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Motif // ID  Accession_number
 +
                DB_remark ?Text #Evidence
 +
                DB_text ?LongText
 +
                Web_location ?WWW_server
 +
        Substrate UNIQUE DNA
 +
                        Peptide
 +
        Homol  DNA_homol ?Sequence XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 +
                Pep_homol ?Protein XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 +
                Motif_homol ?Motif XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 +
                Homol_homol ?Homol_data XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
 +
        GO_term ?GO_term XREF Motif ?GO_code #Evidence
 +
        Associated_transposon_family ?Transposon_family XREF Associated_motif  // to connect Transposon famillies to Repeat motifs ar2 02-DEC-05
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
 +
==Unused tags==
 +
Num_mismatch
 +
 +
Redundant
 +
 +
DB_remark
 +
 +
DB_text
 +
 +
Web_location
 +
 +
Peptide
 +
 +
Motif_homol

Latest revision as of 15:32, 4 October 2010

WormBase Models

Curator Comments/Description

Model

?Motif  Match_sequence  UNIQUE Text     // Text is the DNA or protein sequence
        Num_mismatch UNIQUE Int         // Allowed number of mismatches when matching
                                        // (default 0)
        Restriction     Isoschizomer ?Motif XREF Isoschizomer
                        Offset UNIQUE Int   
                        Cleavage UNIQUE Text  // will show the cleavage points ex: G_ACGT'C
                        Overhang UNIQUE Int
                        Company UNIQUE Text
                        Redundant
        Remark ?Text #Evidence
        Title ?Text
        DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Motif // ID  Accession_number
                DB_remark ?Text #Evidence
                DB_text ?LongText
                Web_location ?WWW_server
        Substrate UNIQUE DNA
                         Peptide
        Homol   DNA_homol ?Sequence XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
                Pep_homol ?Protein XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
                Motif_homol ?Motif XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
                Homol_homol ?Homol_data XREF Motif_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info
        GO_term ?GO_term XREF Motif ?GO_code #Evidence
        Associated_transposon_family ?Transposon_family XREF Associated_motif   // to connect Transposon famillies to Repeat motifs ar2 02-DEC-05

Proposed Changes

Unused tags

Num_mismatch

Redundant

DB_remark

DB_text

Web_location

Peptide

Motif_homol