Difference between revisions of "WormBase Model:Microarray results"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
 
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== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
/////////////////////////////////////////////////////////////////////
 +
//
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// ?Microarray_results class
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// Contains multiple results for one microarray spot. Used for both SMD and Affymetrix chips as well as for generic chips.
 +
//
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/////////////////////////////////////////////////////////////////////
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 +
?Microarray_results    Sequence_info UNIQUE PCR_product    UNIQUE ?PCR_product    XREF Microarray_results
 +
                                            Oligo_set      UNIQUE ?Oligo_set      XREF Microarray_results
 +
                        Gene          ?Gene      XREF Microarray_results #Evidence  // should be mapped during the build
 +
                        CDS          ?CDS        XREF Microarray_results #Evidence  // should be mapped during the build
 +
                        Transcript    ?Transcript XREF Microarray_results #Evidence  // should be mapped during the build
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                        Pseudogene    ?Pseudogene XREF Microarray_results #Evidence  // should be mapped during the build
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                        Microarray    ?Microarray
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                        Results      ?Microarray_experiment UNIQUE #Microarray_data
 +
                        Range        Min UNIQUE Float UNIQUE ?Microarray_experiment  // mix observed ratio or frequency in all experiments and corresponding experiment
 +
                                      Max UNIQUE Float UNIQUE ?Microarray_experiment  // max observed ratio or frequency in all experiments and corresponding experiment
 +
                        Remark        ?Text  #Evidence
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
 +
==Unused tags==
 +
 +
Remark

Latest revision as of 14:44, 4 October 2010

WormBase Models

Curator Comments/Description

Model

/////////////////////////////////////////////////////////////////////
//
// ?Microarray_results class
// Contains multiple results for one microarray spot. Used for both SMD and Affymetrix chips as well as for generic chips. 
//
/////////////////////////////////////////////////////////////////////

?Microarray_results     Sequence_info UNIQUE PCR_product     UNIQUE ?PCR_product     XREF Microarray_results
                                             Oligo_set       UNIQUE ?Oligo_set       XREF Microarray_results
                        Gene          ?Gene       XREF Microarray_results #Evidence   // should be mapped during the build
                        CDS           ?CDS        XREF Microarray_results #Evidence   // should be mapped during the build
                        Transcript    ?Transcript XREF Microarray_results #Evidence   // should be mapped during the build
                        Pseudogene    ?Pseudogene XREF Microarray_results #Evidence   // should be mapped during the build
                        Microarray    ?Microarray
                        Results       ?Microarray_experiment UNIQUE #Microarray_data
                        Range         Min UNIQUE Float UNIQUE ?Microarray_experiment  // mix observed ratio or frequency in all experiments and corresponding experiment
                                      Max UNIQUE Float UNIQUE ?Microarray_experiment  // max observed ratio or frequency in all experiments and corresponding experiment 
                        Remark        ?Text   #Evidence

Proposed Changes

Unused tags

Remark