Difference between revisions of "WormBase Model:Locus"
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Type Polymorphism | Type Polymorphism | ||
+ | |||
Type SNP | Type SNP | ||
− | Status | + | |
− | SNP_assay | + | Type Status |
+ | |||
+ | Type SNP_assay | ||
+ | |||
+ | Type RFLP | ||
+ | |||
+ | Type Transposon_insertion | ||
+ | |||
+ | Type Detection_method | ||
+ | |||
+ | Negative_clone | ||
+ | |||
+ | Mapping_data Well_ordered | ||
+ | |||
+ | Laboratory | ||
+ | |||
+ | Remark |
Latest revision as of 14:28, 4 October 2010
Curator Comments/Description
This is what's left over from the splitting of the class into CDS Pseudogene Transcript
Needs a good cleanup and probably the removal of this class.
Model
/////////////////////////////////////////////////////////////////////////////////// // // ?Locus class - krb Feb 2004 // slimmed down Locus class will initially just store Polymorphisms and gene clusters. // /////////////////////////////////////////////////////////////////////////////////// ?Locus Evidence #Evidence Name Other_name ?Gene_name #Evidence // unidirectional link Species UNIQUE ?Species // added by krb 15/02/02 Type Polymorphism SNP Text // Todd [171001 krb] Status Text SNP_assay ?PCR_product XREF SNP_locus ?Text RFLP Text Transposon_insertion Text Detection_method Text Map UNIQUE ?Map XREF Locus #Map_position Positive Inside_rearr ?Rearrangement XREF Locus_inside ?Author Negative Outside_rearr ?Rearrangement XREF Locus_outside ?Author Negative_clone ?Clone XREF Negative_locus ?Author Mapping_data Well_ordered // "on the line" 2_point ?2_point_data Multi_point ?Multi_pt_data Pos_neg_data ?Pos_neg_data // Allele ?Variation XREF Locus #Evidence // just for SNPs for now Laboratory ?Laboratory Remark ?Text #Evidence
Proposed Changes
Unused Tags
Evidence
Name Other_name
Species
Type Polymorphism
Type SNP
Type Status
Type SNP_assay
Type RFLP
Type Transposon_insertion
Type Detection_method
Negative_clone
Mapping_data Well_ordered
Laboratory
Remark