Difference between revisions of "WormBase Model:Locus"
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+ | This is what's left over from the splitting of the class into CDS Pseudogene Transcript | ||
+ | Needs a good cleanup and probably the removal of this class. | ||
== Model == | == Model == | ||
<pre> | <pre> | ||
+ | /////////////////////////////////////////////////////////////////////////////////// | ||
+ | // | ||
+ | // ?Locus class - krb Feb 2004 | ||
+ | // slimmed down Locus class will initially just store Polymorphisms and gene clusters. | ||
+ | // | ||
+ | /////////////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | ?Locus Evidence #Evidence | ||
+ | Name Other_name ?Gene_name #Evidence // unidirectional link | ||
+ | Species UNIQUE ?Species // added by krb 15/02/02 | ||
+ | Type Polymorphism SNP Text // Todd [171001 krb] | ||
+ | Status Text | ||
+ | SNP_assay ?PCR_product XREF SNP_locus ?Text | ||
+ | RFLP Text | ||
+ | Transposon_insertion Text | ||
+ | Detection_method Text | ||
+ | Map UNIQUE ?Map XREF Locus #Map_position | ||
+ | Positive Inside_rearr ?Rearrangement XREF Locus_inside ?Author | ||
+ | Negative Outside_rearr ?Rearrangement XREF Locus_outside ?Author | ||
+ | Negative_clone ?Clone XREF Negative_locus ?Author | ||
+ | Mapping_data Well_ordered // "on the line" | ||
+ | 2_point ?2_point_data | ||
+ | Multi_point ?Multi_pt_data | ||
+ | Pos_neg_data ?Pos_neg_data | ||
+ | // Allele ?Variation XREF Locus #Evidence // just for SNPs for now | ||
+ | Laboratory ?Laboratory | ||
+ | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | ==Unused Tags== | ||
+ | |||
+ | Evidence | ||
+ | |||
+ | Name Other_name | ||
+ | |||
+ | Species | ||
+ | |||
+ | Type Polymorphism | ||
+ | |||
+ | Type SNP | ||
+ | |||
+ | Type Status | ||
+ | |||
+ | Type SNP_assay | ||
+ | |||
+ | Type RFLP | ||
+ | |||
+ | Type Transposon_insertion | ||
+ | |||
+ | Type Detection_method | ||
+ | |||
+ | Negative_clone | ||
+ | |||
+ | Mapping_data Well_ordered | ||
+ | |||
+ | Laboratory | ||
+ | |||
+ | Remark |
Latest revision as of 14:28, 4 October 2010
Curator Comments/Description
This is what's left over from the splitting of the class into CDS Pseudogene Transcript
Needs a good cleanup and probably the removal of this class.
Model
/////////////////////////////////////////////////////////////////////////////////// // // ?Locus class - krb Feb 2004 // slimmed down Locus class will initially just store Polymorphisms and gene clusters. // /////////////////////////////////////////////////////////////////////////////////// ?Locus Evidence #Evidence Name Other_name ?Gene_name #Evidence // unidirectional link Species UNIQUE ?Species // added by krb 15/02/02 Type Polymorphism SNP Text // Todd [171001 krb] Status Text SNP_assay ?PCR_product XREF SNP_locus ?Text RFLP Text Transposon_insertion Text Detection_method Text Map UNIQUE ?Map XREF Locus #Map_position Positive Inside_rearr ?Rearrangement XREF Locus_inside ?Author Negative Outside_rearr ?Rearrangement XREF Locus_outside ?Author Negative_clone ?Clone XREF Negative_locus ?Author Mapping_data Well_ordered // "on the line" 2_point ?2_point_data Multi_point ?Multi_pt_data Pos_neg_data ?Pos_neg_data // Allele ?Variation XREF Locus #Evidence // just for SNPs for now Laboratory ?Laboratory Remark ?Text #Evidence
Proposed Changes
Unused Tags
Evidence
Name Other_name
Species
Type Polymorphism
Type SNP
Type Status
Type SNP_assay
Type RFLP
Type Transposon_insertion
Type Detection_method
Negative_clone
Mapping_data Well_ordered
Laboratory
Remark