Difference between revisions of "WormBase Model:Locus"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
 
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This is what's left over from the splitting of the class into CDS Pseudogene Transcript
  
 +
Needs a good cleanup and probably the removal of this class.
  
  
 
== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
///////////////////////////////////////////////////////////////////////////////////
 +
//
 +
// ?Locus class - krb Feb 2004
 +
// slimmed down Locus class will initially just store Polymorphisms and gene clusters.
 +
//
 +
///////////////////////////////////////////////////////////////////////////////////
 +
 +
?Locus  Evidence #Evidence
 +
        Name    Other_name ?Gene_name #Evidence // unidirectional link
 +
        Species UNIQUE ?Species // added by krb 15/02/02
 +
        Type    Polymorphism    SNP  Text              // Todd [171001 krb]
 +
                                Status Text
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                                SNP_assay ?PCR_product XREF SNP_locus ?Text
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                                RFLP    Text
 +
                                Transposon_insertion  Text
 +
                                Detection_method Text
 +
        Map    UNIQUE ?Map XREF Locus #Map_position
 +
        Positive Inside_rearr ?Rearrangement XREF Locus_inside ?Author
 +
        Negative Outside_rearr ?Rearrangement XREF Locus_outside ?Author
 +
                Negative_clone ?Clone XREF Negative_locus ?Author
 +
        Mapping_data    Well_ordered            // "on the line"
 +
                        2_point ?2_point_data
 +
                        Multi_point ?Multi_pt_data
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                        Pos_neg_data ?Pos_neg_data
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//        Allele  ?Variation XREF Locus #Evidence // just for SNPs for now
 +
        Laboratory ?Laboratory
 +
        Remark ?Text #Evidence
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
 +
==Unused Tags==
 +
 +
Evidence
 +
 +
Name Other_name
 +
 +
Species
 +
 +
Type Polymorphism
 +
 +
Type SNP
 +
 +
Type Status
 +
 +
Type SNP_assay
 +
 +
Type RFLP
 +
 +
Type Transposon_insertion
 +
 +
Type Detection_method
 +
 +
Negative_clone
 +
 +
Mapping_data Well_ordered
 +
 +
Laboratory
 +
 +
Remark

Latest revision as of 14:28, 4 October 2010

WormBase Models

Curator Comments/Description

This is what's left over from the splitting of the class into CDS Pseudogene Transcript

Needs a good cleanup and probably the removal of this class.


Model

///////////////////////////////////////////////////////////////////////////////////
// 
// ?Locus class - krb Feb 2004
// slimmed down Locus class will initially just store Polymorphisms and gene clusters.
//
///////////////////////////////////////////////////////////////////////////////////
 
?Locus  Evidence #Evidence
        Name    Other_name ?Gene_name #Evidence // unidirectional link
        Species UNIQUE ?Species // added by krb 15/02/02
        Type    Polymorphism    SNP  Text               // Todd [171001 krb]
                                Status Text
                                SNP_assay ?PCR_product XREF SNP_locus ?Text
                                RFLP    Text
                                Transposon_insertion  Text
                                Detection_method Text
        Map    UNIQUE ?Map XREF Locus #Map_position
        Positive Inside_rearr ?Rearrangement XREF Locus_inside ?Author
        Negative Outside_rearr ?Rearrangement XREF Locus_outside ?Author
                 Negative_clone ?Clone XREF Negative_locus ?Author
        Mapping_data    Well_ordered            // "on the line"
                        2_point ?2_point_data
                        Multi_point ?Multi_pt_data
                        Pos_neg_data ?Pos_neg_data
//        Allele  ?Variation XREF Locus #Evidence // just for SNPs for now
        Laboratory ?Laboratory
        Remark ?Text #Evidence

Proposed Changes

Unused Tags

Evidence

Name Other_name

Species

Type Polymorphism

Type SNP

Type Status

Type SNP_assay

Type RFLP

Type Transposon_insertion

Type Detection_method

Negative_clone

Mapping_data Well_ordered

Laboratory

Remark