Difference between revisions of "WormBase Model:Interaction"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
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== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
////////////////////////////////////////////////////////////////////////////////
 +
//
 +
// ?Interaction class for Andrei WBInteraction00000001           
 +
// Replaces the old interaction model. The main enhancements are information about the interactors and the phenotypes
 +
// relevant to the interaction. For the directional interactions (tags:Regulatory, Suppression, Enhancement, Epistasis)
 +
// the directionality of the interaction is described by the tags Effector and Effected as follows: Effector "Regulates"
 +
// ("Suppresses", "Enhances", or "IsEpistatic To") Effected.
 +
//
 +
// For the rest of the interactions (the non-directional kind) Effector and Effected are considered equivalent.
 +
//
 +
////////////////////////////////////////////////////////////////////////////////
 +
 +
?Interaction  Evidence #Evidence
 +
              Interactor    ?Gene    XREF Interaction    #Interactor_info
 +
              Interaction_type    Genetic    #Interaction_info
 +
                                  Regulatory    #Interaction_info
 +
                                  No_interaction    #Interaction_info
 +
                                  Predicted_interaction    #Interaction_info
 +
                                  Physical_interaction    #Interaction_info
 +
                                  Suppression    #Interaction_info
 +
                                  Enhancement    #Interaction_info
 +
                                  Synthetic    #Interaction_info
 +
                                  Epistasis    #Interaction_info
 +
                                  Mutual_enhancement    #Interaction_info
 +
                                  Mutual_suppression    #Interaction_info
 +
              Confidence          Confidence_level        UNIQUE Float
 +
                                  P_value                UNIQUE Float
 +
                                  Log_likelihood_score    UNIQUE Float
 +
              Paper ?Paper XREF Interaction
 +
              DB_info Database ?Database ?Database_field ?Accession_number
 +
              Remark  ?Text  #Evidence
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
==Unused tags==
 +
 +
Evidence
 +
 +
Confidence_level
 +
 +
P_value
 +
 +
DB_info Database

Revision as of 13:44, 4 October 2010

WormBase Models

Curator Comments/Description

Model

////////////////////////////////////////////////////////////////////////////////
//
// ?Interaction class for Andrei WBInteraction00000001             
// Replaces the old interaction model. The main enhancements are information about the interactors and the phenotypes
// relevant to the interaction. For the directional interactions (tags:Regulatory, Suppression, Enhancement, Epistasis) 
// the directionality of the interaction is described by the tags Effector and Effected as follows: Effector "Regulates"
// ("Suppresses", "Enhances", or "IsEpistatic To") Effected.
//
// For the rest of the interactions (the non-directional kind) Effector and Effected are considered equivalent.
//
////////////////////////////////////////////////////////////////////////////////

?Interaction   Evidence #Evidence
               Interactor    ?Gene    XREF Interaction    #Interactor_info
               Interaction_type    Genetic    #Interaction_info
                                   Regulatory    #Interaction_info
                                   No_interaction    #Interaction_info
                                   Predicted_interaction    #Interaction_info
                                   Physical_interaction    #Interaction_info
                                   Suppression    #Interaction_info
                                   Enhancement    #Interaction_info
                                   Synthetic    #Interaction_info
                                   Epistasis    #Interaction_info
                                   Mutual_enhancement    #Interaction_info
                                   Mutual_suppression    #Interaction_info
               Confidence          Confidence_level        UNIQUE Float
                                   P_value                 UNIQUE Float
                                   Log_likelihood_score    UNIQUE Float
               Paper ?Paper XREF Interaction
               DB_info Database ?Database ?Database_field ?Accession_number
               Remark  ?Text   #Evidence

Proposed Changes

Unused tags

Evidence

Confidence_level

P_value

DB_info Database