Difference between revisions of "WormBase Model:Homology group"
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== Model == | == Model == | ||
<pre> | <pre> | ||
| + | ///////////////////////////////////////////////////////////////////////////////// | ||
| + | // | ||
| + | // ?Homology_group class - krb 031120 | ||
| + | // Class to handle clusters of orthologus genes (COG) and other related data | ||
| + | // | ||
| + | ///////////////////////////////////////////////////////////////////////////////// | ||
| + | |||
| + | |||
| + | ?Homology_group Evidence #Evidence | ||
| + | Title ?Text | ||
| + | DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group | ||
| + | Group_type UNIQUE COG COG_type KOG | ||
| + | TWOG | ||
| + | FOG | ||
| + | LSE | ||
| + | COG_code #COG_codes | ||
| + | HOPS_group // Sonnhammer | ||
| + | RIO_group // Eddy | ||
| + | InParanoid_group | ||
| + | OrthoMCL_group //erich Nov06 | ||
| + | GO_term ?GO_term XREF Homology_group | ||
| + | Protein ?Protein XREF Homology_group | ||
| + | Remark ?Text #Evidence | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
| + | ?Homology_group Evidence #Evidence | ||
| + | Title ?Text | ||
| + | DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group | ||
| + | Group_type UNIQUE COG COG_type #Homology_type | ||
| + | COG_code #COG_codes | ||
| + | eggNOG eggNOG_type #Homology_type | ||
| + | eggNOG_code #COG_codes | ||
| + | InParanoid_group | ||
| + | OrthoMCL_group //erich Nov06 | ||
| + | GO_term ?GO_term XREF Homology_group | ||
| + | Protein ?Protein XREF Homology_group | ||
| + | Remark ?Text #Evidence | ||
| + | |||
| + | #Homology_type KOG | ||
| + | TWOG | ||
| + | FOG | ||
| + | LSE | ||
| + | NOG //eggNOG - standard cluster | ||
| + | euNOG //eggNOG - eukaryote cluster | ||
| + | meNOG //eggNOG - metazoan cluster | ||
| + | |||
| + | And I want to remove the HOPS and RIO tags | ||
| + | |||
| + | == Unused tags== | ||
| + | |||
| + | <pre> | ||
| + | Evidence | ||
| + | DB_info Database | ||
| + | Group_type HOPS_group | ||
| + | RIO_group | ||
| + | GO_term | ||
| + | Remark | ||
| + | </pre> | ||
Latest revision as of 11:11, 23 May 2011
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////////////
//
// ?Homology_group class - krb 031120
// Class to handle clusters of orthologus genes (COG) and other related data
//
/////////////////////////////////////////////////////////////////////////////////
?Homology_group Evidence #Evidence
Title ?Text
DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group
Group_type UNIQUE COG COG_type KOG
TWOG
FOG
LSE
COG_code #COG_codes
HOPS_group // Sonnhammer
RIO_group // Eddy
InParanoid_group
OrthoMCL_group //erich Nov06
GO_term ?GO_term XREF Homology_group
Protein ?Protein XREF Homology_group
Remark ?Text #Evidence
Proposed Changes
?Homology_group Evidence #Evidence
Title ?Text
DB_info Database ?Database ?Database_field ?Accession_number XREF Homology_group
Group_type UNIQUE COG COG_type #Homology_type
COG_code #COG_codes
eggNOG eggNOG_type #Homology_type
eggNOG_code #COG_codes
InParanoid_group
OrthoMCL_group //erich Nov06
GO_term ?GO_term XREF Homology_group
Protein ?Protein XREF Homology_group
Remark ?Text #Evidence
#Homology_type KOG
TWOG
FOG
LSE
NOG //eggNOG - standard cluster
euNOG //eggNOG - eukaryote cluster
meNOG //eggNOG - metazoan cluster
And I want to remove the HOPS and RIO tags
Unused tags
Evidence
DB_info Database
Group_type HOPS_group
RIO_group
GO_term
Remark
