WormBase Model:Homol info
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Revision as of 15:04, 1 November 2010 by Mh6 (talk | contribs) (Created page with 'WormBase Models == Curator Comments/Description == == Model == <pre> #Homol_info Align Int UNIQUE Int UNIQUE Int // not needed if full alignment i…')
Curator Comments/Description
Model
#Homol_info Align Int UNIQUE Int UNIQUE Int // not needed if full alignment is ungapped // one row per ungapped alignment section // first int is position in query, second in target // third int is length - only necessary when gaps in both sequences align AlignDNAPep Int UNIQUE Int UNIQUE Int AlignPepDNA Int UNIQUE Int UNIQUE Int Target_species UNIQUE ?Species EMBL_dump UNIQUE EMBL_dump_YES EMBL_dump_NO // overrides for embl dump based on method EMBL_qualifier Text // additional to those in the method, includes '/'
Proposed Changes
#Homol_info Align Int UNIQUE Int UNIQUE Int Target_species UNIQUE ?Species AlignDNAPep Int UNIQUE Int UNIQUE Int AlignPepDNA Int UNIQUE Int UNIQUE Int Match_string UNIQUE RefFwd_HitFwd UNIQUE Text RefFwd_HitRev UNIQUE Text RefRev_HitFwd UNIQUE Text RefRev_HitRev UNIQUE Text
Basically get rid of the EMBL tags, and add support for cigar strings.
unused tags
- EMBL_dump
- EMBL_qualifier