Difference between revisions of "WormBase Model:Feature"
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== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | == Unused tags == | ||
+ | |||
+ | Public_name - This will be good for UTRome data/modENCODE data that has a "real" name on the modENCODE pages? | ||
+ | |||
+ | Defined_by_author - ? | ||
+ | |||
+ | Associated_with_transposon | ||
+ | |||
+ | Associated_with_Position_Matrix - unused and poss defunct? better connect the ?PM to the query substrate? | ||
+ | |||
+ | Annotation |
Revision as of 10:34, 4 October 2010
Curator Comments/Description
Model
/////////////////////////////////////////////////////////////////////////// // // Feature class // /////////////////////////////////////////////////////////////////////////// ?Feature SMap S_parent UNIQUE Sequence UNIQUE ?Sequence XREF Feature_object Name Public_name UNIQUE ?Text Other_name ?Text Flanking_sequences UNIQUE ?Sequence UNIQUE Text UNIQUE Text DNA_text UNIQUE ?Text // for storing the sequence of the feature...can use IUPAC codes to be able // store consensus sequences, e.g. binding site consensus sequence Origin Species UNIQUE ?Species //added by pad, as we are moving towards multi species readyness. History Merged_into UNIQUE ?Feature XREF Acquires_merge #Evidence Acquires_merge ?Feature XREF Merged_into #Evidence Deprecated Text #Evidence Visible Description ?Text SO_term ?SO_term XREF Feature Defined_by Defined_by_sequence ?Sequence XREF Defines_feature #Evidence Defined_by_paper ?Paper XREF Feature #Evidence Defined_by_person ?Person Defined_by_author ?Author Defined_by_analysis ?Analysis Associations Associated_with_gene ?Gene XREF Associated_feature #Evidence // richard Associated_with_CDS ?CDS XREF Associated_feature #Evidence // richard Associated_with_transcript ?Transcript XREF Associated_feature #Evidence // richard Associated_with_pseudogene ?Pseudogene XREF Associated_feature #Evidence // richard Associated_with_transposon ?Transposon XREF Associated_feature #Evidence //richard Associated_with_variation ?Variation XREF Feature #Evidence Associated_with_Position_Matrix ?Position_Matrix XREF Associated_feature #Evidence Associated_with_operon ?Operon XREF Associated_feature #Evidence Associated_with_gene_regulation ?Gene_regulation XREF Associated_feature #Evidence Associated_with_expression_pattern ?Expr_pattern XREF Associated_feature #Evidence Associated_with_Feature ?Feature XREF Associated_with_Feature #Evidence Bound_by_product_of ?Gene XREF Gene_product_binds #Evidence //pad added this to show what gene it binds Annotation UNIQUE ?LongText // added for data attribution [030220 dl] Confidential_remark ?Text //pad Remark ?Text #Evidence Method UNIQUE ?Method
Proposed Changes
Unused tags
Public_name - This will be good for UTRome data/modENCODE data that has a "real" name on the modENCODE pages?
Defined_by_author - ?
Associated_with_transposon
Associated_with_Position_Matrix - unused and poss defunct? better connect the ?PM to the query substrate?
Annotation