Difference between revisions of "WormBase Model:Expression cluster"

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== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
//////////////////////////////////
 +
//
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// ?Expression_cluster class
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// For microarray data clustering results.
 +
//
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//////////////////////////////////
 +
 +
?Expression_cluster  Description  ?Text // refers to Biological meaning of this cluster group
 +
                    Algorithm    Text  // refers to the algorithm that was used to get this clustering result.
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                    Reference    ?Paper XREF Expression_cluster //reference of the experiment
 +
                    Microarray_results ?Microarray_results  Text #Evidence  //refers to all experimental results included in the cluster.
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                    SAGE_tag ?SAGE_tag Text #Evidence //this is for clustering results concluded from SAGE experiment
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                    Gene ?Gene XREF Expression_cluster #Evidence          //Igor: populated during build based on Microarray_results mapping. Wen: sometimes entered directly when no microarray spot IDs were provided by the authors.
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                    Expr_pattern      ?Expr_pattern XREF Expression_cluster #Evidence //Wen: for clustering results concluded from Localizome
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                    Remark ?Text #Evidence //for any other comments 
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                    Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06
  
 
</pre>
 
</pre>
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== unused tags ==
 
== unused tags ==
  
SAGE_tag
+
SAGE_tag - can be removed.
  
Expr_pattern
+
Expr_pattern - this is actually used by one paper regarding Localizome.

Latest revision as of 22:50, 6 December 2010

WormBase Models

Curator Comments/Description

Model

//////////////////////////////////
//
// ?Expression_cluster class
// For microarray data clustering results.
//
//////////////////////////////////

?Expression_cluster  Description  ?Text // refers to Biological meaning of this cluster group
                     Algorithm    Text  // refers to the algorithm that was used to get this clustering result.
                     Reference    ?Paper XREF Expression_cluster //reference of the experiment
                     Microarray_results ?Microarray_results  Text #Evidence  //refers to all experimental results included in the cluster.
                     SAGE_tag ?SAGE_tag Text #Evidence //this is for clustering results concluded from SAGE experiment
                     Gene ?Gene XREF Expression_cluster #Evidence           //Igor: populated during build based on Microarray_results mapping. Wen: sometimes entered directly when no microarray spot IDs were provided by the authors. 
                     Expr_pattern       ?Expr_pattern XREF Expression_cluster #Evidence //Wen: for clustering results concluded from Localizome
                     Remark ?Text #Evidence //for any other comments   
                     Anatomy_term ?Anatomy_term XREF Expression_cluster #Evidence //Describes microarray experiments involving expression profiling in a particular tissue or cell Igor Dec 06

Proposed Changes

unused tags

SAGE_tag - can be removed.

Expr_pattern - this is actually used by one paper regarding Localizome.