WormBase Model:Expr pattern

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WormBase Models

Curator Comments/Description

Model

?Expr_pattern   Expression_of   Gene ?Gene XREF Expr_pattern
                                CDS        ?CDS XREF Expr_pattern // for coding genes
                                Sequence   ?Sequence XREF Expr_pattern // for clones???
                                Pseudogene ?Pseudogene XREF Expr_pattern // [030801 krb]
                                Clone ?Clone XREF Expr_pattern
                                Protein ?Protein XREF Expr_pattern
                                Protein_description Text   // stores information for Expr_patterns with unknown antigens [031105 krb]
                Homol Homol_homol ?Homol_data XREF Expr_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info //Expr_pattern mapping [060427 ar2]
                Expressed_in    Cell         ?Cell         XREF Expr_pattern #Qualifier
                                Cell_group   ?Cell_group   XREF Expr_pattern #Qualifier
                                Life_stage   ?Life_stage   XREF Expr_pattern #Qualifier
                                Anatomy_term ?Anatomy_term XREF Expr_pattern #Qualifier
                                GO_term      ?GO_term      XREF Expr_pattern #GR_condition
                Subcellular_localization ?Text
                Type    Reporter_gene ?Text
                        In_situ Text
                        Antibody ?Text
                        Northern Text // Wen [krb 030425]
                        Western Text  // Wen 
                        RT_PCR Text   // Wen
                        Localizome ?Text //added by Wen
                Expression_cluster ?Expression_cluster XREF Expr_pattern //added by Wen.for localizome
                Pattern ?Text
                Picture ?Picture XREF Expr_pattern
                MovieURL Text //Added by wen for link to movie URLs. 
                Movie    ?Movie    XREF Expr_pattern  //Added by Wen to curate Expr_pattern video
                Remark ?Text #Evidence
                Experiment      Laboratory ?Laboratory
                                Author ?Author 
                                Date UNIQUE DateType
                                Strain UNIQUE ?Strain
                Reference ?Paper XREF Expr_pattern
                Transgene ?Transgene XREF Expr_pattern
                Associated_feature ?Feature XREF Associated_with_expression_pattern #Evidence
                Antibody_info ?Antibody XREF Expr_pattern // This applies to both Western & Antibody staining
                                                          // added [031120 krb]
                Curated_by UNIQUE Text // Hinxton (HX) or Caltech (CIT) Sylvia [010927 krb]

Proposed Changes

unused tags

CDS

Cell_group

GO_term

Expression_cluster

Movie