WormBase Model:Expr pattern
?Expr_pattern Expression_of Gene ?Gene XREF Expr_pattern //For genes that were studied CDS ?CDS XREF Expr_pattern //this tag is not used any more Sequence ?Sequence XREF Expr_pattern //this tag is not used any more Pseudogene ?Pseudogene XREF Expr_pattern //this tag is not used any more Clone ?Clone XREF Expr_pattern //this is to record plasmid names for the study, not used any more Protein ?Protein XREF Expr_pattern //this tag is not used any more Protein_description Text // stores information for Expr_patterns done with immunostaining with unknown antigens Homol Homol_homol ?Homol_data XREF Expr_homol ?Method Float Int UNIQUE Int Int UNIQUE Int #Homol_info //Expr_pattern mapping Expressed_in Cell ?Cell XREF Expr_pattern #Qualifier //this tag is not used any more Cell_group ?Cell_group XREF Expr_pattern #Qualifier //this tag is not used any more Life_stage ?Life_stage XREF Expr_pattern #Qualifier //expressed in life stages Anatomy_term ?Anatomy_term XREF Expr_pattern #Qualifier //expressed in tissue parts or cells GO_term ?GO_term XREF Expr_pattern #GR_condition //for cellular components Subcellular_localization ?Text //description on subcellular localization Type Reporter_gene ?Text //The following tags indicate what kind of experiments were done. In_situ Text Antibody ?Text Northern Text Western Text RT_PCR Text Localizome ?Text Expression_cluster ?Expression_cluster XREF Expr_pattern //For localizome data to summarize genes with similar expression profiles. Pattern ?Text //description of cellular and/or developmental expression pattern Picture ?Picture XREF Expr_pattern //link to picture files in WormBase. MovieURL Text //link to movie URLs that store movies externally Movie ?Movie XREF Expr_pattern //link to movie files in WormBase. Remark ?Text #Evidence //for any other information not fitting the model but still important. Experiment Laboratory ?Laboratory //Labs who performed the experiment. The following subtags are for data submitted by authors but not published. Author ?Author //Author of the experiment Date UNIQUE DateType //Date the experiment were performed or data submitted. Strain UNIQUE ?Strain //Stains used for the experiment Reference ?Paper XREF Expr_pattern //Paper that the experiments were published. Transgene ?Transgene XREF Expr_pattern //Transgene reagent used. Associated_feature ?Feature XREF Associated_with_expression_pattern #Evidence Antibody_info ?Antibody XREF Expr_pattern // This applies to both Western & Antibody staining, antibody reagent. Curated_by UNIQUE Text //To identify whether the curation was done by Hixton or Caltech. Not useful any more since all data are now curated by Caltech.
CDS -- can be removed, replaced by Gene.
Sequence - can be removed, replaced by Gene.
Pseudogene - can be removed, replaced by Gene.
Protein - can be removed, replaced by Gene.
Cell -- can be removed, replaced by Anatomy_term
Cell_group -- can be removed, replaced by Anatomy_term
GO_term -- this is currently used extensively.
Expression_cluster -- used by localizome data
Movie -- not used although plan to use it in the future.