Difference between revisions of "WormBase Model:Condition"

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Line 17: Line 17:
 
//////////////////////////////////
 
//////////////////////////////////
  
?Condition Life_stage      ?Life_stage
+
?Condition Life_stage      ?Life_stage //life stage of the worms
 
           Sex            UNIQUE Hermaphrodite
 
           Sex            UNIQUE Hermaphrodite
 
                                   Male
 
                                   Male
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           Strain          ?Strain // added for Microarry_result [030127 krb]
 
           Strain          ?Strain // added for Microarry_result [030127 krb]
 
           Preparation    ?Text // added for Microarray_result [030127 krb]
 
           Preparation    ?Text // added for Microarray_result [030127 krb]
           Temperature    Int
+
           Temperature    Int //temperature of the experiment
           Genotype        ?Text
+
           Genotype        ?Text //record genotype when strain name is not available.
           Other          ?Text
+
           Other          ?Text  
           Relationship    Contains        ?Condition XREF Contained_in
+
           Relationship    Contains        ?Condition XREF Contained_in //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used. 
 
                           Contained_in    ?Condition XREF Contains
 
                           Contained_in    ?Condition XREF Contains
 
                           Precedes        ?Condition XREF Follows
 
                           Precedes        ?Condition XREF Follows
 
                           Follows        ?Condition XREF Precedes
 
                           Follows        ?Condition XREF Precedes
           Reference      ?Paper  //Defines the condition.
+
           Reference      ?Paper  //Paper that defines the condition.
           Tissue          ?Anatomy_term  // added for Experiment (Microarray_results)
+
           Tissue          ?Anatomy_term  //for samples that are not whole worm but only a tissue part.
           Treatment      ?Text // added for Experiment (Microarray_results)
+
           Treatment      ?Text //treatment of the sample.
           SAGE_experiment ?SAGE_experiment XREF Sample
+
           SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment
 
           Analysis        ?Analysis XREF Sample  
 
           Analysis        ?Analysis XREF Sample  
 
           Remark          ?Text #Evidence
 
           Remark          ?Text #Evidence
Line 43: Line 43:
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
 +
Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent.
  
 
== unused tags ==
 
== unused tags ==

Latest revision as of 22:58, 6 December 2010

WormBase Models

Curator Comments/Description

Model

//////////////////////////////////
//
//?Condition class
//
//////////////////////////////////

?Condition Life_stage      ?Life_stage //life stage of the worms
           Sex             UNIQUE Hermaphrodite
                                  Male
                                  Female        //not all worms are elegans!
                                  Unknown
           Food            Text
           Exposure_time   Text
           Strain          ?Strain // added for Microarry_result [030127 krb]
           Preparation     ?Text // added for Microarray_result [030127 krb]
           Temperature     Int //temperature of the experiment
           Genotype        ?Text //record genotype when strain name is not available. 
           Other           ?Text 
           Relationship    Contains        ?Condition XREF Contained_in  //The following tags are for samples with time sequence, for example, L1 sample precedes L2 samples, but not really used.  
                           Contained_in    ?Condition XREF Contains
                           Precedes        ?Condition XREF Follows
                           Follows         ?Condition XREF Precedes
           Reference       ?Paper  //Paper that defines the condition.
           Tissue          ?Anatomy_term   //for samples that are not whole worm but only a tissue part.
           Treatment       ?Text //treatment of the sample. 
           SAGE_experiment ?SAGE_experiment XREF Sample //refers to SAGE experiment
           Analysis        ?Analysis XREF Sample 
           Remark          ?Text #Evidence

Proposed Changes

Wen: It is strange that ?Condition XREF to SAGE experiment but not Microarray experiment. It is not consistent.

unused tags

Hermaphrodite

Male

Female

Exposure_time

Contains

Contained_in