Difference between revisions of "WormBase Model:Clone"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | //////////////////////////////////////////////////////////////////////////////// | ||
+ | // ?Clone class | ||
+ | //////////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | ?Clone Evidence #Evidence | ||
+ | Remark General_remark ?Text | ||
+ | Y_remark ?Text | ||
+ | PCR_remark ?Text | ||
+ | Position Map ?Map XREF Clone #Map_position | ||
+ | pMap UNIQUE ?Contig XREF Clone UNIQUE Int UNIQUE Int | ||
+ | // pMap units are bands | ||
+ | Clone_left_end ?Sequence // filled by XREF | ||
+ | Clone_right_end ?Sequence // filled by XREF | ||
+ | Pos_neg_data ?Pos_neg_data | ||
+ | Positive Positive_gene ?Gene XREF Positive_clone | ||
+ | Positive_variation ?Variation XREF Positive_clone ?Author | ||
+ | Inside_rearr ?Rearrangement XREF Clone_inside ?Author | ||
+ | Hybridizes_to ?Clone XREF Positive_probe ?Grid | ||
+ | Hybridizes_weak ?Clone XREF Pos_probe_weak ?Grid | ||
+ | Positive_probe ?Clone XREF Hybridizes_to ?Grid | ||
+ | Pos_probe_weak ?Clone XREF Hybridizes_weak ?Grid | ||
+ | Negative Negative_gene ?Gene XREF Negative_clone | ||
+ | Negative_locus ?Locus XREF Negative_clone ?Author | ||
+ | Outside_rearr ?Rearrangement XREF Clone_outside ?Author | ||
+ | Negative_probe ?Clone XREF Does_not_hybridize_to ?Grid | ||
+ | Does_not_hybridize_to ?Clone XREF Negative_probe ?Grid | ||
+ | In_strain ?Strain XREF Clone | ||
+ | Sequence ?Sequence XREF Clone | ||
+ | PCR_product ?PCR_product XREF Clone | ||
+ | Length Seq_length UNIQUE Int // bp | ||
+ | Gel_length UNIQUE Float // Kb | ||
+ | Location ?Laboratory #Lab_Location | ||
+ | URL Text // to link to MRC_geneservice website ar2 | ||
+ | Gridded ?Grid | ||
+ | Grid_data ?Grid_data | ||
+ | FingerPrint Gel_Number UNIQUE Int | ||
+ | Approximate_Match_to UNIQUE ?Clone XREF Canonical_for | ||
+ | Exact_Match_to UNIQUE ?Clone XREF Canonical_for | ||
+ | Funny_Match_to UNIQUE ?Clone XREF Canonical_for | ||
+ | Canonical_for ?Clone UNIQUE Int UNIQUE Int | ||
+ | // start and stop offsets from self start | ||
+ | Bands UNIQUE Int UNIQUE Int | ||
+ | Gel ?Motif #Lane // Magic tag2 construct | ||
+ | Contig9 Chromosome UNIQUE ?Map | ||
+ | Vaxmap UNIQUE Float | ||
+ | In_Situ UNIQUE Int UNIQUE Int // percent of physical chromosome | ||
+ | Cosmid_grid | ||
+ | Canon_for_cosmid | ||
+ | Flag UNIQUE Int | ||
+ | Autopos | ||
+ | Expression_construct Pattern ?Text // archaic | ||
+ | Reference ?Paper XREF Clone | ||
+ | cDNA_group Contains ?Clone XREF Contains Text | ||
+ | Contained_in ?Clone XREF Contained_in | ||
+ | Best_match UNIQUE ?Text | ||
+ | Expr_pattern ?Expr_pattern XREF Clone | ||
+ | Sequence_status Shotgun UNIQUE DateType | ||
+ | Finished UNIQUE DateType | ||
+ | Accession_number UNIQUE Text | ||
+ | DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Clone // added [031120 krb] | ||
+ | Type UNIQUE Cosmid // 000824 Lincoln's additions to segregate clones | ||
+ | Fosmid // added 06/12/01 by krb for dl | ||
+ | YAC | ||
+ | cDNA | ||
+ | Plasmid | ||
+ | Other Text // added to catch all clones 011017 dl | ||
+ | Transgene ?Transgene XREF Clone | ||
+ | Derived_from ?Clone | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | == unused tags == | ||
+ | |||
+ | Evidence | ||
+ | |||
+ | Negative_locus | ||
+ | |||
+ | Negative_probe | ||
+ | |||
+ | Does_not_hybridize_to | ||
+ | |||
+ | Seq_length | ||
+ | |||
+ | URL | ||
+ | |||
+ | Grid_data | ||
+ | |||
+ | Gel | ||
+ | |||
+ | Expression_construct | ||
+ | |||
+ | Pattern | ||
+ | |||
+ | Contained_in |
Revision as of 11:15, 10 August 2010
Curator Comments/Description
Model
//////////////////////////////////////////////////////////////////////////////// // ?Clone class //////////////////////////////////////////////////////////////////////////////// ?Clone Evidence #Evidence Remark General_remark ?Text Y_remark ?Text PCR_remark ?Text Position Map ?Map XREF Clone #Map_position pMap UNIQUE ?Contig XREF Clone UNIQUE Int UNIQUE Int // pMap units are bands Clone_left_end ?Sequence // filled by XREF Clone_right_end ?Sequence // filled by XREF Pos_neg_data ?Pos_neg_data Positive Positive_gene ?Gene XREF Positive_clone Positive_variation ?Variation XREF Positive_clone ?Author Inside_rearr ?Rearrangement XREF Clone_inside ?Author Hybridizes_to ?Clone XREF Positive_probe ?Grid Hybridizes_weak ?Clone XREF Pos_probe_weak ?Grid Positive_probe ?Clone XREF Hybridizes_to ?Grid Pos_probe_weak ?Clone XREF Hybridizes_weak ?Grid Negative Negative_gene ?Gene XREF Negative_clone Negative_locus ?Locus XREF Negative_clone ?Author Outside_rearr ?Rearrangement XREF Clone_outside ?Author Negative_probe ?Clone XREF Does_not_hybridize_to ?Grid Does_not_hybridize_to ?Clone XREF Negative_probe ?Grid In_strain ?Strain XREF Clone Sequence ?Sequence XREF Clone PCR_product ?PCR_product XREF Clone Length Seq_length UNIQUE Int // bp Gel_length UNIQUE Float // Kb Location ?Laboratory #Lab_Location URL Text // to link to MRC_geneservice website ar2 Gridded ?Grid Grid_data ?Grid_data FingerPrint Gel_Number UNIQUE Int Approximate_Match_to UNIQUE ?Clone XREF Canonical_for Exact_Match_to UNIQUE ?Clone XREF Canonical_for Funny_Match_to UNIQUE ?Clone XREF Canonical_for Canonical_for ?Clone UNIQUE Int UNIQUE Int // start and stop offsets from self start Bands UNIQUE Int UNIQUE Int Gel ?Motif #Lane // Magic tag2 construct Contig9 Chromosome UNIQUE ?Map Vaxmap UNIQUE Float In_Situ UNIQUE Int UNIQUE Int // percent of physical chromosome Cosmid_grid Canon_for_cosmid Flag UNIQUE Int Autopos Expression_construct Pattern ?Text // archaic Reference ?Paper XREF Clone cDNA_group Contains ?Clone XREF Contains Text Contained_in ?Clone XREF Contained_in Best_match UNIQUE ?Text Expr_pattern ?Expr_pattern XREF Clone Sequence_status Shotgun UNIQUE DateType Finished UNIQUE DateType Accession_number UNIQUE Text DB_info Database ?Database ?Database_field UNIQUE ?Accession_number XREF Clone // added [031120 krb] Type UNIQUE Cosmid // 000824 Lincoln's additions to segregate clones Fosmid // added 06/12/01 by krb for dl YAC cDNA Plasmid Other Text // added to catch all clones 011017 dl Transgene ?Transgene XREF Clone Derived_from ?Clone
Proposed Changes
unused tags
Evidence
Negative_locus
Negative_probe
Does_not_hybridize_to
Seq_length
URL
Grid_data
Gel
Expression_construct
Pattern
Contained_in