Difference between revisions of "WormBase Model:Antibody"

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/////////////////////////////////////////////////////////////////////////////////////////////
 
/////////////////////////////////////////////////////////////////////////////////////////////
  
?Antibody Summary ?Text #Evidence
+
?Antibody Summary ?Text #Evidence //Summary of the antibody
           Other_name Text
+
           Other_name Text //for synonyms of the antibody
           Gene ?Gene XREF Antibody
+
           Gene ?Gene XREF Antibody //Antigen gene
           Isolation Original_publication UNIQUE ?Paper
+
           Isolation Original_publication UNIQUE ?Paper //original publication of the antibody.
                     No_original_reference    Text //proposed by Wen
+
                     No_original_reference    Text //for antibody without reference
                     Person ?Person
+
                     Person ?Person //person who created the antibody
                     Location ?Laboratory
+
                     Location ?Laboratory //Lab that created the antibody
                     Clonality UNIQUE Polyclonal Text
+
                     Clonality UNIQUE Polyclonal Text //indicate if the Ab is polyclonal or monoclonal
 
                                     Monoclonal Text
 
                                     Monoclonal Text
                     Antigen UNIQUE Peptide Text
+
                     Antigen UNIQUE Peptide Text //if the Ab is created with peptide.
                                   Protein Text
+
                                   Protein Text //if the Ab is created with protein.
                                   Other_antigen Text
+
                                   Other_antigen Text //if the Ab is created with isolated tissue or anything else.
                     Animal UNIQUE Rabbit
+
                     Animal UNIQUE Rabbit //The following tags indicate the animal that was used to generate the antiserum
 
                                   Mouse
 
                                   Mouse
 
                                   Rat
 
                                   Rat
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                                   Goat
 
                                   Goat
 
                                   Other_animal Text
 
                                   Other_animal Text
           Possible_pseudonym ?Antibody XREF Possible_pseudonym_of
+
           Possible_pseudonym ?Antibody XREF Possible_pseudonym_of //this antibody may be the same as another antibody in WormBase
           Possible_pseudonym_of ?Antibody XREF Possible_pseudonym
+
           Possible_pseudonym_of ?Antibody XREF Possible_pseudonym //this antibody may be the same as another antibody in WormBase
           Expr_pattern ?Expr_pattern XREF Antibody_info
+
           Expr_pattern ?Expr_pattern XREF Antibody_info //This antibody is used for expression pattern analysis
           Gene_regulation ?Gene_regulation XREF Antibody_info
+
           Gene_regulation ?Gene_regulation XREF Antibody_info //This antibody is used to study expression pattern change in mutants or under treatments
           Reference ?Paper XREF Antibody
+
           Reference ?Paper XREF Antibody //All papers that ever refer to this antibody
           Remark ?Text #Evidence  
+
           Remark ?Text #Evidence //Other information related to the antibody.
  
 
</pre>
 
</pre>

Latest revision as of 00:53, 7 December 2010

WormBase Models

Curator Comments/Description

Model

/////////////////////////////////////////////////////////////////////////////////////////////
//
//  Antibody model
//
// Summary records the whole description extracted from paper
// Other_name holds the antibody's name appeared in the paper, such as MH27
// XREF from ?Antibody to ?CDS class will be added after ?CDS is integrated 
// into models.wrm and gets stable.
//
// added by krb 031120
//
// Well defined antibodies will be full populated with Isolation data.  Ambigous anibodies
// will be connected to what it is believed to be by the Possible_pseudonym(_of) pair of tags
// No connection to CDS is required - just Gene is fine
//
/////////////////////////////////////////////////////////////////////////////////////////////

?Antibody Summary ?Text #Evidence  //Summary of the antibody
          Other_name Text //for synonyms of the antibody
          Gene ?Gene XREF Antibody //Antigen gene
          Isolation Original_publication UNIQUE ?Paper //original publication of the antibody.
                    No_original_reference    Text //for antibody without reference
                    Person ?Person //person who created the antibody
                    Location ?Laboratory //Lab that created the antibody
                    Clonality UNIQUE Polyclonal Text //indicate if the Ab is polyclonal or monoclonal
                                     Monoclonal Text
                    Antigen UNIQUE Peptide Text //if the Ab is created with peptide. 
                                   Protein Text //if the Ab is created with protein. 
                                   Other_antigen Text //if the Ab is created with isolated tissue or anything else. 
                    Animal UNIQUE Rabbit //The following tags indicate the animal that was used to generate the antiserum
                                  Mouse
                                  Rat
                                  Guinea_pig
                                  Chicken
                                  Goat
                                  Other_animal Text
          Possible_pseudonym ?Antibody XREF Possible_pseudonym_of //this antibody may be the same as another antibody in WormBase
          Possible_pseudonym_of ?Antibody XREF Possible_pseudonym //this antibody may be the same as another antibody in WormBase
          Expr_pattern ?Expr_pattern XREF Antibody_info //This antibody is used for expression pattern analysis
          Gene_regulation ?Gene_regulation XREF Antibody_info //This antibody is used to study expression pattern change in mutants or under treatments
          Reference ?Paper XREF Antibody //All papers that ever refer to this antibody
          Remark ?Text #Evidence  //Other information related to the antibody.

Proposed Changes

Person