Difference between revisions of "WormBase Model:Antibody"

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(Created page with '__TOC__ WormBase Models == Curator Comments/Description == == Model == <pre> </pre> == Proposed Changes ==')
 
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== Model ==
 
== Model ==
 
<pre>
 
<pre>
 +
/////////////////////////////////////////////////////////////////////////////////////////////
 +
//
 +
//  Antibody model
 +
//
 +
// Summary records the whole description extracted from paper
 +
// Other_name holds the antibody's name appeared in the paper, such as MH27
 +
// XREF from ?Antibody to ?CDS class will be added after ?CDS is integrated
 +
// into models.wrm and gets stable.
 +
//
 +
// added by krb 031120
 +
//
 +
// Well defined antibodies will be full populated with Isolation data.  Ambigous anibodies
 +
// will be connected to what it is believed to be by the Possible_pseudonym(_of) pair of tags
 +
// No connection to CDS is required - just Gene is fine
 +
//
 +
/////////////////////////////////////////////////////////////////////////////////////////////
 +
 +
?Antibody Summary ?Text #Evidence
 +
          Other_name Text
 +
          Gene ?Gene XREF Antibody
 +
          Isolation Original_publication UNIQUE ?Paper
 +
                    No_original_reference    Text //proposed by Wen
 +
                    Person ?Person
 +
                    Location ?Laboratory
 +
                    Clonality UNIQUE Polyclonal Text
 +
                                    Monoclonal Text
 +
                    Antigen UNIQUE Peptide Text
 +
                                  Protein Text
 +
                                  Other_antigen Text
 +
                    Animal UNIQUE Rabbit
 +
                                  Mouse
 +
                                  Rat
 +
                                  Guinea_pig
 +
                                  Chicken
 +
                                  Goat
 +
                                  Other_animal Text
 +
          Possible_pseudonym ?Antibody XREF Possible_pseudonym_of
 +
          Possible_pseudonym_of ?Antibody XREF Possible_pseudonym
 +
          Expr_pattern ?Expr_pattern XREF Antibody_info
 +
          Gene_regulation ?Gene_regulation XREF Antibody_info
 +
          Reference ?Paper XREF Antibody
 +
          Remark ?Text #Evidence
  
 
</pre>
 
</pre>
  
 
== Proposed Changes ==
 
== Proposed Changes ==
 +
 +
Person

Revision as of 10:49, 10 August 2010

WormBase Models

Curator Comments/Description

Model

/////////////////////////////////////////////////////////////////////////////////////////////
//
//  Antibody model
//
// Summary records the whole description extracted from paper
// Other_name holds the antibody's name appeared in the paper, such as MH27
// XREF from ?Antibody to ?CDS class will be added after ?CDS is integrated 
// into models.wrm and gets stable.
//
// added by krb 031120
//
// Well defined antibodies will be full populated with Isolation data.  Ambigous anibodies
// will be connected to what it is believed to be by the Possible_pseudonym(_of) pair of tags
// No connection to CDS is required - just Gene is fine
//
/////////////////////////////////////////////////////////////////////////////////////////////

?Antibody Summary ?Text #Evidence
          Other_name Text
          Gene ?Gene XREF Antibody
          Isolation Original_publication UNIQUE ?Paper
                    No_original_reference    Text //proposed by Wen
                    Person ?Person
                    Location ?Laboratory
                    Clonality UNIQUE Polyclonal Text
                                     Monoclonal Text
                    Antigen UNIQUE Peptide Text
                                   Protein Text
                                   Other_antigen Text
                    Animal UNIQUE Rabbit
                                  Mouse
                                  Rat
                                  Guinea_pig
                                  Chicken
                                  Goat
                                  Other_animal Text
          Possible_pseudonym ?Antibody XREF Possible_pseudonym_of
          Possible_pseudonym_of ?Antibody XREF Possible_pseudonym
          Expr_pattern ?Expr_pattern XREF Antibody_info
          Gene_regulation ?Gene_regulation XREF Antibody_info
          Reference ?Paper XREF Antibody
          Remark ?Text #Evidence 

Proposed Changes

Person