Difference between revisions of "WormBase Model:Antibody"
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== Model == | == Model == | ||
<pre> | <pre> | ||
+ | ///////////////////////////////////////////////////////////////////////////////////////////// | ||
+ | // | ||
+ | // Antibody model | ||
+ | // | ||
+ | // Summary records the whole description extracted from paper | ||
+ | // Other_name holds the antibody's name appeared in the paper, such as MH27 | ||
+ | // XREF from ?Antibody to ?CDS class will be added after ?CDS is integrated | ||
+ | // into models.wrm and gets stable. | ||
+ | // | ||
+ | // added by krb 031120 | ||
+ | // | ||
+ | // Well defined antibodies will be full populated with Isolation data. Ambigous anibodies | ||
+ | // will be connected to what it is believed to be by the Possible_pseudonym(_of) pair of tags | ||
+ | // No connection to CDS is required - just Gene is fine | ||
+ | // | ||
+ | ///////////////////////////////////////////////////////////////////////////////////////////// | ||
+ | |||
+ | ?Antibody Summary ?Text #Evidence //Summary of the antibody | ||
+ | Other_name Text //for synonyms of the antibody | ||
+ | Gene ?Gene XREF Antibody //Antigen gene | ||
+ | Isolation Original_publication UNIQUE ?Paper //original publication of the antibody. | ||
+ | No_original_reference Text //for antibody without reference | ||
+ | Person ?Person //person who created the antibody | ||
+ | Location ?Laboratory //Lab that created the antibody | ||
+ | Clonality UNIQUE Polyclonal Text //indicate if the Ab is polyclonal or monoclonal | ||
+ | Monoclonal Text | ||
+ | Antigen UNIQUE Peptide Text //if the Ab is created with peptide. | ||
+ | Protein Text //if the Ab is created with protein. | ||
+ | Other_antigen Text //if the Ab is created with isolated tissue or anything else. | ||
+ | Animal UNIQUE Rabbit //The following tags indicate the animal that was used to generate the antiserum | ||
+ | Mouse | ||
+ | Rat | ||
+ | Guinea_pig | ||
+ | Chicken | ||
+ | Goat | ||
+ | Other_animal Text | ||
+ | Possible_pseudonym ?Antibody XREF Possible_pseudonym_of //this antibody may be the same as another antibody in WormBase | ||
+ | Possible_pseudonym_of ?Antibody XREF Possible_pseudonym //this antibody may be the same as another antibody in WormBase | ||
+ | Expr_pattern ?Expr_pattern XREF Antibody_info //This antibody is used for expression pattern analysis | ||
+ | Gene_regulation ?Gene_regulation XREF Antibody_info //This antibody is used to study expression pattern change in mutants or under treatments | ||
+ | Reference ?Paper XREF Antibody //All papers that ever refer to this antibody | ||
+ | Remark ?Text #Evidence //Other information related to the antibody. | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
+ | |||
+ | Person |
Latest revision as of 00:53, 7 December 2010
Curator Comments/Description
Model
///////////////////////////////////////////////////////////////////////////////////////////// // // Antibody model // // Summary records the whole description extracted from paper // Other_name holds the antibody's name appeared in the paper, such as MH27 // XREF from ?Antibody to ?CDS class will be added after ?CDS is integrated // into models.wrm and gets stable. // // added by krb 031120 // // Well defined antibodies will be full populated with Isolation data. Ambigous anibodies // will be connected to what it is believed to be by the Possible_pseudonym(_of) pair of tags // No connection to CDS is required - just Gene is fine // ///////////////////////////////////////////////////////////////////////////////////////////// ?Antibody Summary ?Text #Evidence //Summary of the antibody Other_name Text //for synonyms of the antibody Gene ?Gene XREF Antibody //Antigen gene Isolation Original_publication UNIQUE ?Paper //original publication of the antibody. No_original_reference Text //for antibody without reference Person ?Person //person who created the antibody Location ?Laboratory //Lab that created the antibody Clonality UNIQUE Polyclonal Text //indicate if the Ab is polyclonal or monoclonal Monoclonal Text Antigen UNIQUE Peptide Text //if the Ab is created with peptide. Protein Text //if the Ab is created with protein. Other_antigen Text //if the Ab is created with isolated tissue or anything else. Animal UNIQUE Rabbit //The following tags indicate the animal that was used to generate the antiserum Mouse Rat Guinea_pig Chicken Goat Other_animal Text Possible_pseudonym ?Antibody XREF Possible_pseudonym_of //this antibody may be the same as another antibody in WormBase Possible_pseudonym_of ?Antibody XREF Possible_pseudonym //this antibody may be the same as another antibody in WormBase Expr_pattern ?Expr_pattern XREF Antibody_info //This antibody is used for expression pattern analysis Gene_regulation ?Gene_regulation XREF Antibody_info //This antibody is used to study expression pattern change in mutants or under treatments Reference ?Paper XREF Antibody //All papers that ever refer to this antibody Remark ?Text #Evidence //Other information related to the antibody.
Proposed Changes
Person