Difference between revisions of "WormBase Model:Accession number"
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== Model == | == Model == | ||
<pre> | <pre> | ||
| + | /////////////////////////////////////////////////////////////////////////////////////////////////// | ||
| + | // | ||
| + | // Accession_number | ||
| + | // | ||
| + | // Small class to track lots of different accessions which are not just EMBL/GenBank accessions. | ||
| + | // E.g. they can be: SGD ORF ids, GenBank GI numbers, protein IDs, Ensembl identifiers, swissprot | ||
| + | // accessions *and* swissprot identifiers etc. | ||
| + | // Many classes will first reference the ?Accession_number class by specifying both | ||
| + | // a database name and a database field/qualifier to help clarify, e.g. | ||
| + | // | ||
| + | // Protein "WP:CE23172" | ||
| + | // Database TREMBL TrEMBL_AC Q9N2U8 | ||
| + | // WormPep WORMPEP_ID WP:CE23172 | ||
| + | // | ||
| + | //////////////////////////////////////////////////////////////////////////////////////////////////// | ||
| + | ?Accession_number Entry Sequence ?Sequence | ||
| + | CDS ?CDS | ||
| + | Transcript ?Transcript | ||
| + | Pseudogene ?Pseudogene | ||
| + | Protein ?Protein | ||
| + | Motif ?Motif | ||
| + | Clone ?Clone // added [031120 krb] | ||
| + | Homology_group // added [031120 krb] | ||
| + | 3d_data ?3d_data | ||
| + | Structure_data ?Structure_data | ||
| + | Web_location ?Database // use for WWW display | ||
</pre> | </pre> | ||
== Proposed Changes == | == Proposed Changes == | ||
Revision as of 10:34, 10 August 2010
Curator Comments/Description
Model
///////////////////////////////////////////////////////////////////////////////////////////////////
//
// Accession_number
//
// Small class to track lots of different accessions which are not just EMBL/GenBank accessions.
// E.g. they can be: SGD ORF ids, GenBank GI numbers, protein IDs, Ensembl identifiers, swissprot
// accessions *and* swissprot identifiers etc.
// Many classes will first reference the ?Accession_number class by specifying both
// a database name and a database field/qualifier to help clarify, e.g.
//
// Protein "WP:CE23172"
// Database TREMBL TrEMBL_AC Q9N2U8
// WormPep WORMPEP_ID WP:CE23172
//
////////////////////////////////////////////////////////////////////////////////////////////////////
?Accession_number Entry Sequence ?Sequence
CDS ?CDS
Transcript ?Transcript
Pseudogene ?Pseudogene
Protein ?Protein
Motif ?Motif
Clone ?Clone // added [031120 krb]
Homology_group // added [031120 krb]
3d_data ?3d_data
Structure_data ?Structure_data
Web_location ?Database // use for WWW display
