WormBase-Caltech Weekly Calls

From WormBaseWiki
Jump to navigationJump to search

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1

2020 Meetings

January

February


March 5, 2020

WormBase curation

  • Tim Schedl: WB needs to do more curation for phenotype and variation
  • Doing community curation, but not fast enough
  • Would like to work on more automation; e.g. having Textpresso return all sentences mentioning an allele in papers that are predicted to have phenotype data

Alaksa

  • Joesph may be able to meet with Raymond
  • How can the tool be maintained? If it can't it needs to be pulled

Single cell expression tool

  • Tool is here: http://de.wormcells.com/
  • What do we need to consider for pulling into WormBase?
  • Where does the data sit and how does the tool access it? Can we integrate the data more into WormBase (e.g. local curation databases)?
    • Would want it to be in sync with WormBase releases
    • May not need to reprocess with every release with current (small-ish) data set
  • Fully integrated tool versus an embedded tool?

Name service updates

  • For now we will stick to the CGIs that Juancarlos has built for variations and strains
  • Juancarlos can discuss with Matt R. the possibility of integrating API requests to the Name service into the OA