WormBase-Caltech Weekly Calls

From WormBaseWiki
Jump to navigationJump to search

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings












December 10, 2105

RRID (Mary Ann)

Lab head email list (Mary Ann)

  • Request from Ann (CGC) to have a single email address containing all lab heads.
  • Used sparingly to send the community important announcements etc.

December 3, 2015

Datomic conversion

  • There are automated conversion systems being established to convert ACEDB data and models into Datomic
  • The Datomic data models and querying language may take some time to get used to
  • Curators will likely need to work with a models "master" to make model changes
  • Being able to perform complex queries is an important requirement
  • (Mary Ann) Datomic table maker (from Thomas) is reasonably intuitive and should be helpful to users

Wen's data viz proposal

  • Tool or graphic? We would like a tool
  • Question about sustainability: what happens after a tool is developed?
  • Proposal looks good, but need to specify requirements for maintenance and data updates
  • Is it possible to recreate SPELL with a new/different API and/or interface? Likely problematic

SObA phenotype graph

  • Juancarlos has been working on integrating into
  • http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget
  • Looks great, maybe need to tweak the legend position

Uberon linking to WormBase anatomy ontology

  • Chris Mungall had established connections between the two
  • We don't have a current plan to make these fully integrated