WormBase-Caltech Weekly Calls

From WormBaseWiki
Jump to navigationJump to search

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1


2018 Meetings

January

February

March

April

May

June

July

August

September

October


November 1, 2018

Community phenotype requests

  • Sent out 1,000 request emails for community submissions of phenotypes on October 18 and October 20
  • As before, request focuses on a single paper, but we've now added extra papers at bottom of email message
  • We've also added a link for users to click on to indicate that the paper in question (focus paper) has no nematode phenotypes
  • 21 emails bounced
  • 56 papers received annotations, 44 from direct requests, 12 not directly requested
  • 9 of 12 not directly requested were appended requests to email message
  • 277 annotations submitted (raw) via the form (some more submitted as Excel spreadsheets)
    • 247 allele/transgene phenotype annotations
    • 30 RNAi phenotype annotations
  • 48 distinct community curators

SPELL

  • Todd working on a spell.wormbase.org site for doing worm SPELL analyses
  • Should be faster, more stable

Predicted protein-protein interactions

  • Jae has requested data set
  • Total data set 20GB (how much is C. elegans?)
  • Haven't heard back from author recently
  • How much do we want this data? Should reach out a couple more times (once every ~two weeks)