WormBase-Caltech Weekly Calls

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Revision as of 19:03, 12 November 2015 by Cgrove (talk | contribs)
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Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings


2015 Meetings

January

February

March

April

May

June

July

August

September

October


November 5, 2015

IEA GO Annotations informating descriptions for non-elegans

  • Some non-elegans genes have confident-sounding descriptions, about localization for example; likely not manual
  • Will make sure automated descriptions handle IEA's appropriately

Wen using Textpresso machine to build SPELL

  • Athena was taking 48 hours to build SPELL (4GB max memory allotted)
  • Textpresso machine took 24 hours (8GB memory allotted)
  • Maybe we can use Textpresso machine for future builds
  • SPELL java program running on Athena (alloted 4GB out of 6GB)
  • Can monitor Athena memory usage; check for any memory leaks

Community Curation Tracker CGI

SObA Graphs for phenotype

  • Juancarlos will transfer code tomorrow, if there are no change requests before then
  • Existing feature requests will be added to future releases of SObA

Micropublications

  • Daniela spoke with Daniel about having web pages in WormBook style to house micropublications

Status of WormBase User Survey?

Sending author updates

  • Would be nice to have a mechanism to update authors on what has been curated for their paper
  • Could give paper data summaries as well as recent updates to curation for a paper

Objectifying/Itemizing annotations from Postgres

  • What if we objectified itemized Postgres entries for easier display of all annotations per paper, for example?
  • May require addition of a text field tag to the ?Paper class, for example, that would capture each annotation item for a paper
  • This would be in lieu of actually objectifying all annotations


November 12, 2015

Citace upload Dec 1st

SAB set for Feb 4-5