WormBase-Caltech Weekly Calls

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Revision as of 19:05, 11 December 2014 by Cgrove (talk | contribs)
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Previous Years

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2013 Meetings


2014 Meetings

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October

November


December 2014

December 4, 2014

Institution tag in ?Person class

  • Cecilia gets data from papers (affiliation) and direct person submission.
  • Some people are affiliated to several departments or several institutions
  • Do we want to capture and distinguish all affiliations?
  • Should the info be collected and pipe separated inside the Institution tag?
  • This potentially adds a great deal of work to collect, fix, and maintain this info
  • Do we want to create an ?Institution class? Do we want an ?Affiliation class?
  • We want to standardize country name and institution name (use United Nations for reference of country names http://unstats.un.org/unsd/methods/m49/m49alpha.htm )
  • Institution and department can be listed in the same line like
?Person
 Institution ?Text Department ?Text
    • Or if keeping as
 Institution ?Text
    • We'd tokenize the text with pipes or semicolons, separating the Institution name; Insitution city / state / country; Department
    • Or we'll put the Departments in the Street_address tag instead of the Institution tag, making the Insitution tag a controlled vocabulary
  • Standardized county and state names?


December 11, 2014

Updating Constructs

  • Constructs previously only with a text description are getting updated to fit the data model
  • Relevant genes and reporters are being moved to the appropriate tags in (where possible) controlled vocabulary