Difference between revisions of "WormBase-Caltech Weekly Calls"

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= April 28, 2022 =
== WormBase ==
* WB grant report
== Alliance Migration ==
*Discussion of what features are commonly used in the Caltech paper editor or otherwise wrt papers
*Discussion of what features are commonly used in the curation status form
= May 12, 2022 =
= May 12, 2022 =

Revision as of 17:51, 12 May 2022

Previous Years

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2022 Meetings






May 12, 2022

Subcellular localization field

  • WB has 2 separate free text fields to capture anatomical and subcellular localization statements but obviously the boundaries are fuzzy, see the example below where the statement belongs to both- there are many examples.

“miR-228 is expressed in the germline and preferentially localizes to the nuclear periphery.”

  • Other MODs do not make such distinction.
  • Daniela is asking the group advice to see if there is any objection in merging the 2 fields and slot the paragraph descriptions in the ExpressionExperimentStatement in LinkML.

    is_a: EntityStatement

    description: >-

      Free-text describing some aspect(s) of a gene's expression, particularly

      nuanced information that is not readily captured in annotations.

      This statement's scope is limited to the associated ExpressionExperiment.

    notes: >-

      Inherits: statement_subject, statement_type, statement_text, references.



        range: ExpressionExperiment