Difference between revisions of "WormBase-Caltech Weekly Calls"

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== April 9, 2020 ==
 
== April 9, 2020 ==
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=== Volunteer curators ===
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* Have sent out emails to schedule tutorials
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* Chris had one tutorial with Michael Davies (Alyson Ashe's lab) yesterday
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* One more already scheduled for next Monday with Wilber and Stephanie from Paul's lab

Revision as of 16:30, 9 April 2020

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1

2020 Meetings

January

February

March


April 2, 2020

Community phenotype requests

  • March 9-28
  • 2,548 emails went out; 89 bounced; 6 resent; 13 backup; 2,478 successful emails
  • 361 annotations overall
  • 48 papers requested received curation (2% response rate)
  • 53 distinct papers overall (5 papers without request)
  • 53 distinct persons overall

Community curation volunteers

  • Tracking volunteers here
  • 14 volunteers so far, all have been assigned a WBPerson ID
  • Chris will set up a webinar tutorial in the coming week or two

AFP pipeline

  • Will resend email requests to authors that haven't already responded
  • May also send out for older papers
  • May work with people to help
  • Does the old AFP form still work? It should
  • If someone has a link to the old form, they won't get one for the new form
  • Maybe could set up an automatic redirect from the old form to the new form
  • Received many submissions recently (>20% response rate)

Ontology Annotator

  • Need to work on Genotype OA dumper
  • Turns out semicolons are problematic (currently in genotypes and transgenes) for object names (ontology fields)
  • Ampersands (&) are also problematic for object names in the OA
    • 20237 | Is[Pgcy-5::daf-2a::venus; Punc-122::mCherry] | 2014-10-08 10:32:45.874519-07
    • 20239 | Ex[Pgcy-5::casy-1::venus; Pgcy-5::aman-2::mCherry; Punc-122::mCherry] | 2014-10-08 10:45:23.202362-07
    • 20238 | Is[Pgcy-5::daf-2c::venus; Punc-122::mCherry] | 2014-10-08 10:38:19.859078-07
    • 25249 | Ex[Prheb-1::rheb-1::GFP; unc-119(+] | 2018-06-29 10:16:40.784295-07
    • 16283 | [hlh-13::GFP;unc-119(+)] | 2013-02-07 17:43:22.384819-08
    • 26131 | Ex[pedc-3EDC-3::DsRed;pRF4] | 2019-08-14 08:44:49.91063-07

Use Slack More

  • Slack is a good tool for quick communication among team members; would be good for all curators to join Slack to enable efficient communication


April 9, 2020

Volunteer curators

  • Have sent out emails to schedule tutorials
  • Chris had one tutorial with Michael Davies (Alyson Ashe's lab) yesterday
  • One more already scheduled for next Monday with Wilber and Stephanie from Paul's lab