Difference between revisions of "WormBase-Caltech Weekly Calls"
From WormBaseWiki
Jump to navigationJump to searchm (→March 5, 2020) |
|||
Line 43: | Line 43: | ||
=== Single cell expression tool === | === Single cell expression tool === | ||
+ | * Tool is here: http://de.wormcells.com/ | ||
* What do we need to consider for pulling into WormBase? | * What do we need to consider for pulling into WormBase? | ||
* Where does the data sit and how does the tool access it? Can we integrate the data more into WormBase (e.g. local curation databases)? | * Where does the data sit and how does the tool access it? Can we integrate the data more into WormBase (e.g. local curation databases)? |
Revision as of 17:31, 5 March 2020
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
March 5, 2020
WormBase curation
- Tim Schedl: WB needs to do more curation for phenotype and variation
- Doing community curation, but not fast enough
- Would like to work on more automation; e.g. having Textpresso return all sentences mentioning an allele in papers that are predicted to have phenotype data
Alaksa
- Joesph may be able to meet with Raymond
- How can the tool be maintained? If it can't it needs to be pulled
Single cell expression tool
- Tool is here: http://de.wormcells.com/
- What do we need to consider for pulling into WormBase?
- Where does the data sit and how does the tool access it? Can we integrate the data more into WormBase (e.g. local curation databases)?
- Would want it to be in sync with WormBase releases
- May not need to reprocess with every release with current (small-ish) data set
- Fully integrated tool versus an embedded tool?
Name service updates
- For now we will stick to the CGIs that Juancarlos has built for variations and strains
- Juancarlos can discuss with Matt R. the possibility of integrating API requests to the Name service into the OA