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| | [[WormBase-Caltech_Weekly_Calls_February_2019|February]] | | [[WormBase-Caltech_Weekly_Calls_February_2019|February]] |
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| | + | [[WormBase-Caltech_Weekly_Calls_March_2019|March]] |
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| − | == March 7, 2019 == | + | == April 4, 2019 == |
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| − | === IWM workshop === | + | === Topic 1 === |
| − | * Still haven't heard back from organizers yet
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| − | | |
| − | === IWM swag ===
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| − | * Think of ideas for the meeting
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| − | | |
| − | === Upload ===
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| − | * Local upload to Spica is Tuesday, March 12th, 10am Pacific
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| − | | |
| − | === Trustworthy data repositories workshop ===
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| − | * Chris will go to NIH, April 8 and 9
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| − | * To discuss trustworthiness standards for data repositories
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| − | | |
| − | | |
| − | ==March 21, 2019==
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| − | | |
| − | ===IWM 2019 workshop===
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| − | Topic/Speaker | |
| − | *Start with gene page, that's when you have a single gene --Kimberly
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| − | *Then go on to data mining, for multiple genes--SimpleMine, WormMine, Parasite BioMart etc --Wen and Chris
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| − | *Then you can also visualize data with these tools-WoBR, SoBA, etc
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| − | *If you are interested in other species, find cross-species data at the Alliance --Ranjana
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| − | *Help us curate your data! End with community curation-New Author First pass form, community curation forms--Daniela
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| − | | |
| − | I think we have a good flow here, can keep thinking about this. Ranjana will shorten abstract and submit final list first week of April.
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| − | | |
| − | ===IWM 2019 swag ideas===
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| − | *WormBase sticker
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| − | **Micropub folks have done stickers, in Paul's office, take a look
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| − | **Daniela will look into this, pricing and time
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| − | *Gary's ideas:
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| − | **Screen cleaning cloths with community curation theme on them, he will send around the picture
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| − | **Water bottles for the top community curators
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| − | **Fidget spinners, with the WB picture in the middle
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| − | **Gary will talk to Daniel to see if he can help with finding sellers/prices
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| − | | |
| − | We could do them all , a mixture, depending on the budget, need to ask Paul S. what the budget is for IWM swag
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| − | | |
| − | | |
| − | | |
| − | ==March 28, 2019==
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| − | | |
| − | ===Textpresso Central vs Old Textpresso site===
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| − | *A search for "SimpleMine" got 1 paper in TPC, 5 papers in the old site.
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| − | *A search for "alg-5" in TPC got 6 hits but the first two were redundant. The result missed pmid29927939 that was found by the old site.
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| − | *A search for allele "ev673" in TPC returns no results, but expected paper (PMID:24004945 / WBPaper00044133) returned in old site.
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| − | * TPC is undergoing an update to the paper pipeline
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| − | * Individual issues should be entered in GitHub tracker
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| − | * Duplicates result from XML vs PDF documents (should probably be merged somehow), as well as supplementals
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| − | | |
| − | === Protein-protein interactions up-to-date ===
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| − | * We should post an announcement to the community
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| − | * Could ask for feedback if any authors are aware of anything missing
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| − | | |
| − | === Micropublication tutorials ===
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| − | * Can Wen mention (at small RNA meeting) that micropub representatives can do site visits to discuss micropubs?
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| − | | |
| − | === Allele display on gene pages ===
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| − | * Some have expressed that the display could be better
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| − | * We will need some specific feedback
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| − | * We had made several changes to isolate phenotypic alleles from non-phenotypic alleles
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| − | | |
| − | === IWM swag ===
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| − | * Screen cloths/cleaners? preferred option; order ~2,000
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| − | * Stickers also? maybe not
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| − | * Shot glasses (40-50 remaining)? Specific prizes for top community curators?
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| − | * Left over WB bags (not high quality; maybe don't bother)
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| − | | |
| − | === Help desk enrichment analysis ===
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| − | * David (now postdoc at MIT) helped respond to user question; will eventually need to maintain without David
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| − | * Should migrate enrichment analysis to Alliance (although ontologies not aligned yet)
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| − | * Design requires decisions for tuning; some may not be obvious to users
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| − | * Could allow curator or user to tune parameters? What are the statistical arguments?
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| − | * We could try to simplify the current maintenance to make it easier to manage parameters in-house
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| − | | |
| − | === Collaborators tool ===
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| − | * Would be good to take advantage of WB person/author data to pull out list of collaborators for a given person/author
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| − | * Should that be time/data interval restricted/specified? Just be inclusive and user/author can edit/trim as needed
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| − | * Pedigree vs. collaborators analysis?
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