Difference between revisions of "WormBase-Caltech Weekly Calls"
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=== Parasite Paper Pipeline and Curation Status Tracking === | === Parasite Paper Pipeline and Curation Status Tracking === | ||
| − | *~4% of Journal articles (roughly, but not precisely translates | + | *~4% of Journal articles (roughly, but not precisely, translates to curatable papers) mention both Caenorhabditis species and parasite species |
*We discussed last week the options for accurately tracking data type flagging and curation status for these papers | *We discussed last week the options for accurately tracking data type flagging and curation status for these papers | ||
*SVM does not flag data at the species level, but we need a way to distinguish curation status based on species or it will be difficult to get accurate numbers for Caltech and Hinxton | *SVM does not flag data at the species level, but we need a way to distinguish curation status based on species or it will be difficult to get accurate numbers for Caltech and Hinxton | ||
Revision as of 19:16, 4 August 2016
Contents
Previous Years
2016 Meetings
August 4, 2016
Parasite Paper Pipeline and Curation Status Tracking
- ~4% of Journal articles (roughly, but not precisely, translates to curatable papers) mention both Caenorhabditis species and parasite species
- We discussed last week the options for accurately tracking data type flagging and curation status for these papers
- SVM does not flag data at the species level, but we need a way to distinguish curation status based on species or it will be difficult to get accurate numbers for Caltech and Hinxton
- One option would be to have separate status tables
- Lump Caltech and Hinxton species together or distinguish each species separately?
- Other options?
Intellectual lineage graph
- Raymond - are we ready to implement as a widget on person page?
- Can toggle to show only direct relationships
- Will eventually be able to toggle by relationship type
- These will simplify complex graphs
SVM for MGI
- Yuling is tying up loose ends for MGI SVM before he leaves
AGR Timeline meeting
- Timeline still pretty high-level but making progress
Complex genotype to phenotype annotation
- Chris - still planning to work out details over models mailing list
- We can go ahead with the creation of phenotype report objects to encapsulate complex genotypes
- Another approach to consider is whether or not to create "set" objects that contain sets of, for example, alleles, genes, etc.
- We could potentially reuse sets as they come up again in different contexts, or in replicate experiments
Teleconference line
- New AT&T conference call is OK, not great
- BlueJeans is too expensive for our purposes
