Difference between revisions of "WormBase-Caltech Weekly Calls"

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===Communication tools for umod teams===
 
===Communication tools for umod teams===
 
*Mike Cherry set up Stanford umod-project- email lists for the different umod groups, PIs, software developers, and curators
 
*Mike Cherry set up Stanford umod-project- email lists for the different umod groups, PIs, software developers, and curators
*Slack is back, download the app and look for the uMOD Project. Browse the channels and join the ones that you want.
+
*Slack is back, download the app and look umod-project. You can also visit https://umod-project.slack.com/.
 +
**Browse the channels and join the ones that you want.
 
*Suzi Lewis will be setting up a github account for project tracking and wiki pages
 
*Suzi Lewis will be setting up a github account for project tracking and wiki pages
  

Revision as of 18:15, 12 May 2016

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings


2016 Meetings

January

February

March

April


May 5, 2015

Tissue enrichment tool

  • Some slight modifications have been made
  • Raymond/Juancarlos request testing
  • Made adjustments to gene name handling
  • Tool could go live for the next release
  • Data will remain frozen at WS252

Gene summaries

  • Paul asked Norbert about gene descriptions
  • FB has been getting good community response for contributing gene descriptions
  • Automation still sounds like the right way to go
  • Ranjana will look at summaries at other MOD sites

Phenotype display

  • MGI/MGD had a graph display of phenotype ontology (Paul S.)
  • Made phenotype ontology slim for the summary heatmaps
  • How do all of the MODs display phenotypes?

Progress reports

  • Curators can write a paragraph on innovation
    • Community curation (report numbers)
    • WOBr
    • SObA
    • Automated descriptions
    • Micropublications

Curation pipeline comparisons

  • Would be nice to compare how MODs prioritize curation, triage papers, etc.
  • How many MODs curate paper-by-paper (for all datatypes at once) vs. our method, by datatype?
    • WB & MGI curate by datatype, most others by paper (for all datatypes)
  • How are all MODs doing in terms of paper coverage?
    • Do we need more manual effort, more automation? How much, given cost of each?

SPELL

  • SGD uses SPELL but does not develop


May 12, 2016

Communication tools for umod teams

  • Mike Cherry set up Stanford umod-project- email lists for the different umod groups, PIs, software developers, and curators
  • Slack is back, download the app and look umod-project. You can also visit https://umod-project.slack.com/.
    • Browse the channels and join the ones that you want.
  • Suzi Lewis will be setting up a github account for project tracking and wiki pages

Human Disease working group meeting

Progress Report

Cross MOD call