Difference between revisions of "WormBase-Caltech Weekly Calls"
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* Old life stages in ACEDB as string name instead of life stage ID | * Old life stages in ACEDB as string name instead of life stage ID | ||
* Have been cleaned up | * Have been cleaned up | ||
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=== Updating Curation Status Form === | === Updating Curation Status Form === | ||
* Textpresso string matches have been included in the form | * Textpresso string matches have been included in the form | ||
* Papers flagged as positive by string matching are included as positives for the indicated data type | * Papers flagged as positive by string matching are included as positives for the indicated data type | ||
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=== Community Annotation Approaches === | === Community Annotation Approaches === |
Revision as of 19:36, 6 November 2014
Contents
Previous Years
2014 Meetings
November 6, 2014
Cleaning up obsolete life stages
- Old life stages in ACEDB as string name instead of life stage ID
- Have been cleaned up
Updating Curation Status Form
- Textpresso string matches have been included in the form
- Papers flagged as positive by string matching are included as positives for the indicated data type
Community Annotation Approaches
- Working on tables and forms
- Will be good to reach out to community (Paul's lab and others)
- Need to consider how we handle controlled vocabularies and ontologies
- Need to see how users/community are able to find the appropriate term for each
- Distinguish between publisher-mandated submission and voluntary submission
- We want to take advantage of the existing data submission forms wherever possible
- Idea: include a link to data submission forms from data widgets within the WormBase website
- Chris working with Textpresso to identify ontology terms from paper text for suggestion to community annotators
Construct object submission in OA
- There have been some problems up until yesterday (Nov 5) where the OA wasn't appropriately taking in ?Construct entries
- Curators can work with Juancarlos to pull up annotation history to double check that data was entered properly