Difference between revisions of "WormBase-Caltech Weekly Calls"

From WormBaseWiki
Jump to navigationJump to search
Line 10: Line 10:
 
**Could Textpresso be harnessed for this task?
 
**Could Textpresso be harnessed for this task?
 
**There are different evidences attached to gene-paper connections
 
**There are different evidences attached to gene-paper connections
**Genes associated with a paper via Textpresso searches could be presented for the first-pass curator for approval in the first-pass form
+
**Genes associated with a paper via Textpresso searches could be presented to the first-pass curator for approval in the first-pass form
  
 
*Other gene-object connections
 
*Other gene-object connections
 
**Develop a canned query for all objects that should be associated with the gene page
 
**Develop a canned query for all objects that should be associated with the gene page

Revision as of 13:45, 11 June 2009

June 11, 2009

  • Discussion of allele-paper connections
    • Jolene has a Textpresso-based pipeline for identifying alleles in papers
    • Alleles get associated with a paper if there is phenotypic or molecular data
    • List of all alleles could possibly be passed on to Sanger for subsequent connection to papers
  • Discussion of gene-paper connections
    • What criteria should be used for associating genes with papers?
    • Currently being associated manually by a curator during first-pass
    • Could Textpresso be harnessed for this task?
    • There are different evidences attached to gene-paper connections
    • Genes associated with a paper via Textpresso searches could be presented to the first-pass curator for approval in the first-pass form
  • Other gene-object connections
    • Develop a canned query for all objects that should be associated with the gene page