Difference between revisions of "WormBase-Caltech Weekly Calls"
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5. Continuous development and integration locally -> AWS | 5. Continuous development and integration locally -> AWS | ||
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+ | ===Commercial antibodies=== | ||
+ | * Daniela contacted ZFIN and FlyBase. ZFIN does curate commercial antibodies only if found in publications. Waiting for FlyBase feedback (Sian out). | ||
+ | * TODO: Contact TAIR and see if they including commercial antibodies and if they charge companies (Daniela sent a message on slack) | ||
+ | * This can be an Alliance project. Need to contact companies and see who is interested (need to have a price in mind for that). | ||
+ | * Can pilot text mining for commercial antibodies |
Revision as of 17:31, 18 November 2021
Contents
Previous Years
2021 Meetings
November 4 2021
Migrating Paper Pipeline to Alliance
- Meeting abstracts
- Continuing to review what we have and standardize bibliographic info before we migrate
- QC checks highlight some older abstracts with little-to-no data - propose to invalidate these so we don't migrate poor quality paper data to the Alliance
- We can always respond to individual requests to add old meeting abstracts if they arise
November 11 2021
WS284 upload dates for Caltech
- When are files due for the Caltech group?
Minutes
- WS284 upload-Better to upload before the holidays or in Jan 2022
- Wen will contact Paul D/Hinxton to find out when the WS284 models will be released
November 18 2021
Proposal for upgrading tanzendra/mangolassi computing resources
1. Move them to Chen. (done) monitor stability of network
Old hardware and out of support OS (Ubuntu 14.04)
2. Establish a development environment for Dockerizing services (curation OA, other web forms, postgres DB) (use Valerio's local server/desktop)
3. Establish a local file server for storage and download access (PDFs, dump files)
4. Run dockerized services from AWS
5. Continuous development and integration locally -> AWS
Commercial antibodies
- Daniela contacted ZFIN and FlyBase. ZFIN does curate commercial antibodies only if found in publications. Waiting for FlyBase feedback (Sian out).
- TODO: Contact TAIR and see if they including commercial antibodies and if they charge companies (Daniela sent a message on slack)
- This can be an Alliance project. Need to contact companies and see who is interested (need to have a price in mind for that).
- Can pilot text mining for commercial antibodies