Difference between revisions of "WormBase-Caltech Weekly Calls"
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| Mus musculus (mouse), Rattus norvegicus (rat) | | Mus musculus (mouse), Rattus norvegicus (rat) | ||
| Primary | | Primary | ||
− | |||
| N/A | | N/A | ||
− | | | + | | N/A |
+ | | Not from WormBase, but if added from another group we'd want to indicate that it doesn't have C. elegans experimental data? | ||
| /home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids | | /home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids | ||
| Paper shows partial sequence alignment including C. elegans snb-1 in Figure 1A; other species in alignment include M. musculus, H. sapiens, X. leavis, and D. melanogaster | | Paper shows partial sequence alignment including C. elegans snb-1 in Figure 1A; other species in alignment include M. musculus, H. sapiens, X. leavis, and D. melanogaster | ||
− | | | + | | PubMed indexes proteins and their respective species shown in sequence alignments |
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Revision as of 15:24, 3 December 2020
Contents
Previous Years
2020 Meetings
Dec 3rd, 2020
Hench et al paper
- Thomas Burglin would like the data from paper 00046864 to be included in WB
- They want to provide APT profiles (signal intensity along the anterior-posterior axis over time) as images and movies (time lapse reporter expression)
- They have recorded movies for 60 homeobox genes and over 85 genes in total.
- If we decide to import the collection, movies, images, and description could be displayed as the collection from Murray: https://wormbase.org/species/all/expr_pattern/Expr10431#012--10
WormBase Papers and Alliance ABC
- PubMed keyword search 'elegans'
PMID | Paper Editor Action | WBPaper ID | Paper Title | Species | Primary/Not Primary | Other Paper Editor Flags | Any SVM Positives | Add to ABC | Comments (1) | Comments (2) | Comments (3) |
---|---|---|---|---|---|---|---|---|---|---|---|
31761535 | Approve | 58971 | The Hyaluronidase, TMEM2, Promotes ER Homeostasis and Longevity Independent of the UPR ER | Homo sapiens, Caenorhabditis elegans | Primary | Author-Person | Yes | Yes | |||
31868179 | Approve | 58999 | Measuring the Effects of Bacteria and Chemicals on the Intestinal Permeability of Caenorhabditis elegans | Caenorhabditis elegans | Primary | Author-Person | None | Yes | |||
31875562 | Reject | None | Intracellular Vesicle Fusion Requires a Membrane-Destabilizing Peptide Located at the Juxtamembrane Region of the v-SNARE | Mus musculus (mouse), Rattus norvegicus (rat) | Primary | N/A | N/A | Not from WormBase, but if added from another group we'd want to indicate that it doesn't have C. elegans experimental data? | /home/postgres/work/pgpopulation/wpa_papers/pmid_downloads/rejected_pmids | Paper shows partial sequence alignment including C. elegans snb-1 in Figure 1A; other species in alignment include M. musculus, H. sapiens, X. leavis, and D. melanogaster | PubMed indexes proteins and their respective species shown in sequence alignments |