Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_November_2015|November]]
 
[[WormBase-Caltech_Weekly_Calls_November_2015|November]]
  
== December 10, 2105 ==
 
 
=== RRID (Mary Ann)===
 
* Has anyone been working with Anita Bandrowski on this?
 
* It seems to have the same aims as our GSA markup pipeline.
 
* examples http://www.biomedcentral.com/1471-2202/16/25/ & https://scicrunch.org/resolver/RRID:CGC_N2
 
 
=== Lab head email list (Mary Ann) ===
 
* Request from Ann (CGC) to have a single email address containing all lab heads.
 
* Used sparingly to send the community important announcements etc.
 
  
 
== December 3, 2015 ==
 
== December 3, 2015 ==
Line 70: Line 60:
 
* Chris Mungall had established connections between the two
 
* Chris Mungall had established connections between the two
 
* We don't have a current plan to make these fully integrated
 
* We don't have a current plan to make these fully integrated
 +
 +
 +
== December 10, 2105 ==
 +
 +
=== RRID (Mary Ann)===
 +
* Has anyone been working with Anita Bandrowski on this?
 +
* It seems to have the same aims as our GSA markup pipeline.
 +
* examples http://www.biomedcentral.com/1471-2202/16/25/ & https://scicrunch.org/resolver/RRID:CGC_N2
 +
 +
=== Lab head email list (Mary Ann) ===
 +
* Request from Ann (CGC) to have a single email address containing all lab heads.
 +
* Used sparingly to send the community important announcements etc.

Revision as of 18:59, 10 December 2015

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings


2015 Meetings

January

February

March

April

May

June

July

August

September

October

November


December 3, 2015

Datomic conversion

  • There are automated conversion systems being established to convert ACEDB data and models into Datomic
  • The Datomic data models and querying language may take some time to get used to
  • Curators will likely need to work with a models "master" to make model changes
  • Being able to perform complex queries is an important requirement
  • (Mary Ann) Datomic table maker (from Thomas) is reasonably intuitive and should be helpful to users

Wen's data viz proposal

  • Tool or graphic? We would like a tool
  • Question about sustainability: what happens after a tool is developed?
  • Proposal looks good, but need to specify requirements for maintenance and data updates
  • Is it possible to recreate SPELL with a new/different API and/or interface? Likely problematic

SObA phenotype graph

  • Juancarlos has been working on integrating into
  • http://juancarlos.wormbase.org , look at a gene page, open Phenotype Graph widget
  • Looks great, maybe need to tweak the legend position

Uberon linking to WormBase anatomy ontology

  • Chris Mungall had established connections between the two
  • We don't have a current plan to make these fully integrated


December 10, 2105

RRID (Mary Ann)

Lab head email list (Mary Ann)

  • Request from Ann (CGC) to have a single email address containing all lab heads.
  • Used sparingly to send the community important announcements etc.