Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
 
[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
  
 +
[[WormBase-Caltech_Weekly_Calls_May_2021|May]]
  
== May 13, 2021 ==
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[[WormBase-Caltech_Weekly_Calls_June_2021|June]]
  
=== Textpresso supplement ===
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[[WormBase-Caltech_Weekly_Calls_July_2021|July]]
* Due Monday
 
* Michael working with Paul S
 
  
=== AWS credits ===
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[[WormBase-Caltech_Weekly_Calls_August_2021|August]]
* Michael and Valerio were awarded AWS credits, more than they can use
 
* Maybe they can be repurposed
 
* Valerio will play around with AWS to determine the best/cheapest configuration before migrating to the Alliance
 
  
=== Automated gene descriptions ===
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[[WormBase-Caltech_Weekly_Calls_September_2021|September]]
* Will the Alliance ever accommodate non-elegans worm species? Can we port over the computed/derived descriptions for non-elegans species to the Alliance?
 
* Maybe have clade-specific descriptions based on the popular model (worms based on C. elegans); may be provided in MOD portal page(s)
 
* May be the focus of an Alliance supplement
 
* We want a flexible pipeline that can be configured depending on availability of data (e.g. protein domains)
 
  
=== IWM 2021 WB Workshop ===
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* Scheduled for June 22, 2021
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== October 14, 2021 ==
* Session begins at 8:30am Pacific / 11:30am Eastern / 4:30pm UK
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* Workshop runs for 90 minutes: 4 15-minute talks followed by 30 minute Q&A session
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=== WormBase HD YouTube channel has ads ===
* Here is the submitted workshop schedule:
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* Is there a way to turn them off? Seems like we cannot remove them entirely
  11:30 am (EDT) Magdalena Zarowiecki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase
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11:45 am (EDT) Chris Grove, California Institute of Technology, Researching transcriptional regulation using WormBase transcription factors, TF binding sites and the modENCODE data
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=== Form headers and footers no longer updating ===
12:00 pm (EDT) Ranjana Kishore, California Institute of Technology, Comparative genomics and disease research using Alliance of Genome Resources
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* WS version number falls out of date; Juancarlos will manually update
12:15 pm (EDT) Daniela Raciti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline
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12:30 pm (EDT) Chris Grove, California Institute of Technology, Open Discussion / Q & A
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== October 21, 2021 ==
 +
 
 +
=== Next Upload ===
 +
* Probably before the Holidays, will discuss again next conference call
 +
 
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=== Chen webinar ===
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* Good to have an in person meeting
 +
Paul will check if it can be done remote, too
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* Raymond, Valerio (community curation), Wen (Simple mine)
 +
 
 +
=== Alliance literature group ===
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* Ceri stepping down from literature group leader, as she took on the Blue Team PO role
 +
* Who can replace her?
 +
* Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO

Latest revision as of 15:53, 21 October 2021

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May

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October 14, 2021

WormBase HD YouTube channel has ads

  • Is there a way to turn them off? Seems like we cannot remove them entirely

Form headers and footers no longer updating

  • WS version number falls out of date; Juancarlos will manually update

October 21, 2021

Next Upload

  • Probably before the Holidays, will discuss again next conference call

Chen webinar

  • Good to have an in person meeting
  • Paul will check if it can be done remote, too
  • Raymond, Valerio (community curation), Wen (Simple mine)

Alliance literature group

  • Ceri stepping down from literature group leader, as she took on the Blue Team PO role
  • Who can replace her?
  • Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO