Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
  
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[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
  
GoToMeeting link: https://www.gotomeet.me/wormbase1
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= 2021 Meetings =
  
= 2020 Meetings =
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[[WormBase-Caltech_Weekly_Calls_January_2021|January]]
  
[[WormBase-Caltech_Weekly_Calls_January_2020|January]]
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[[WormBase-Caltech_Weekly_Calls_February_2021|February]]
  
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[[WormBase-Caltech_Weekly_Calls_March_2021|March]]
  
== February 6, 2020 ==
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[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
  
=== Worcester Area Worm Meeting talk ===
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[[WormBase-Caltech_Weekly_Calls_May_2021|May]]
* Confirmed for December 2020 or February 2021
 
  
=== Alaska software ===
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[[WormBase-Caltech_Weekly_Calls_June_2021|June]]
* Code developed and maintained by Joseph, but not long term solution
 
* Raymond and Eduardo talked about taking it over
 
* Why have a web application vs. a command-line application?
 
** Wanted to make it easy, but also to capture meta data for WB
 
* Should/will find out from Joseph about how hard it is to maintain the software
 
* Maybe it could be taken over by Alliance, as RNA-Seq/Microarray meta data are getting harmonized
 
* Expression working group working with Brian Oliver to have GEO take in more structured meta data
 
* Array Express tried requiring more structured meta data, but authors stopped submitting
 
* May be possible to build a form that collects meta data while simultaneously submitting to GEO in parallel
 
  
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[[WormBase-Caltech_Weekly_Calls_July_2021|July]]
  
== February 13, 2020 ==
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[[WormBase-Caltech_Weekly_Calls_August_2021|August]]
  
=== Alliance Literature Group ===
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[[WormBase-Caltech_Weekly_Calls_September_2021|September]]
* Held first meeting on Monday, February 10th
 
* Regular meetings will be on Tuesdays at 10am/1pm/6pm
 
* Representatives from each group will give a brief overview of their literature pipelines before the group gets into details about deliverables
 
* Question about centralized paper repository; group needs guidance from Alliance PIs on how to proceed
 
  
=== ?Genotype class model ===
 
* [https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?pli=1#bookmark=id.7r3e8pg19rd8 Proposal]
 
* Can aim to implement for WS277 but may have to wait until WS278
 
  
=== Genotype OA ===
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== October 14, 2021 ==
* Will put documentation [[Genotype|here]]
 
  
=== WB All-Hands Meeting ===
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=== WormBase HD YouTube channel has ads ===
* [https://doodle.com/poll/7f65p4ba6d88ztzt Doodle poll]
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* Is there a way to turn them off? Seems like we cannot remove them entirely
* Any thoughts at this point? Still need to discuss with Hinxton, Toronto.
 
  
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=== Form headers and footers no longer updating ===
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* WS version number falls out of date; Juancarlos will manually update
  
== February 20, 2020 ==
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== October 21, 2021 ==
  
=== Genotype ===
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=== Next Upload ===
* We will equate superficially similar/identical genotypes for now
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* Probably before the Holidays, will discuss again next conference call
* What if labs sequence strains later and find out more?
 
* Labs will have to report strains and their sequence and we back-curate accordingly
 
  
=== VC2010 assembly genes ===
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=== Chen webinar ===
* WormMine now returning double the gene count for C. elegans genes because of incorporation of newest VC2010 assembly
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* Good to have an in person meeting
* How to best handle these "extra" genes?
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* Paul will check if it can be done remote, too
* We could make different species entries that specify the assembly version
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* Raymond, Valerio (community curation), Wen (Simple mine)
  
 
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=== Alliance literature group ===
== February 27, 2020 ==
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* Ceri stepping down from literature group leader, as she took on the Blue Team PO role
 
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* Who can replace her?
=== Genotype ===
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* Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO
* [[Genotype|Genotype Wiki page]] updated
 
* Will start building Genotype OA
 
 
 
=== Outreach inbox ===
 
* 65 unread messages pertaining to AFP, some dating back to June. Can we clean these up?
 
* Many are bounced emails messages
 
* Do we want a common place to track bad/bouncing email addresses? We need to distinguish addresses that bounce for policy/SPAM reasons versus those that are likely outdated or no longer in use.
 

Latest revision as of 15:53, 21 October 2021

Previous Years

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2021 Meetings

January

February

March

April

May

June

July

August

September


October 14, 2021

WormBase HD YouTube channel has ads

  • Is there a way to turn them off? Seems like we cannot remove them entirely

Form headers and footers no longer updating

  • WS version number falls out of date; Juancarlos will manually update

October 21, 2021

Next Upload

  • Probably before the Holidays, will discuss again next conference call

Chen webinar

  • Good to have an in person meeting
  • Paul will check if it can be done remote, too
  • Raymond, Valerio (community curation), Wen (Simple mine)

Alliance literature group

  • Ceri stepping down from literature group leader, as she took on the Blue Team PO role
  • Who can replace her?
  • Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO