Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
  
 +
[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
  
GoToMeeting link: https://www.gotomeet.me/wormbase1
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= 2021 Meetings =
  
= 2020 Meetings =
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[[WormBase-Caltech_Weekly_Calls_January_2021|January]]
  
== January 9, 2020 ==
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[[WormBase-Caltech_Weekly_Calls_February_2021|February]]
  
=== Phenotype Curation Requests ===
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[[WormBase-Caltech_Weekly_Calls_March_2021|March]]
* 1,229 emails sent Dec 3-6, 2019
 
* Received 194 annotations from 40 papers and from 37 distinct community curators
 
** 37 papers requested, 3 additional papers annotated
 
** 104 Phenotype OA annotations (from 27 papers; 25 distinct curators)
 
** 90 RNAi OA annotations (from 20 papers; 19 distinct curators)
 
* 43 bounced emails
 
** 2 resent to new addresses
 
** 5 have backup email addresses (also sent)
 
  
=== Worm Area Meetings ===
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[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
* Chris has (re)requested slots for WormBase for the Worcester Area Worm Meeting and the Boston Area Worm Meeting
 
* Will update group if/when a slot is assigned (probably not until Fall 2020 at the earliest)
 
  
=== Reference widget Textpresso linkouts ===
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[[WormBase-Caltech_Weekly_Calls_May_2021|May]]
* Now live on WormBase, WS274
 
* [https://github.com/WormBase/website/issues/7347 GitHub ticket]
 
* Applies to the following classes: genes, strains, variations, transgenes, constructs, anatomy terms, clones, life stages, rearrangements, molecules, processes
 
* Gene example: https://wormbase.org/species/c_elegans/gene/WBGene00022861#0d--10
 
* Strain example: https://wormbase.org/species/c_elegans/strain/WBStrain00004309#05--10
 
* Variation example: https://wormbase.org/species/c_elegans/variation/WBVar00248884#08--10
 
* Transgene example: https://wormbase.org/species/all/transgene/WBTransgene00004654#04--10
 
** Known issue: searching on synonyms in addition to public name; Sibyl will fix
 
* Construct example: https://wormbase.org/species/all/construct/WBCnstr00023113#03--10
 
** Known issue: not working now; need to only search on public name when available, not on summary; Sibyl will fix
 
* Anatomy term example: https://wormbase.org/species/all/anatomy_term/WBbt:0005772#05--10
 
** Known challenge: "Psub1" will essentially never match the intended target and "P1" may find the embryonic cell or the postembryonic cell
 
* Clone example: https://wormbase.org/species/c_elegans/clone/W02C12#03--10
 
* Life stage example: https://wormbase.org/species/all/life_stage/WBls:0000038#03--10
 
** Known challenge: "L4 larva Ce" will never match; "L4 larva" maybe; but "L4" alone will not unless a synonym
 
* Rearrangement example: https://wormbase.org/species/all/rearrangement/sDp3#03--10
 
* Molecule example: https://wormbase.org/resources/molecule/WBMol:00003650#03--10
 
* Process example:
 
  
=== WS276 Citace upload ===
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[[WormBase-Caltech_Weekly_Calls_June_2021|June]]
* Hinxton upload Jan 31, 2020
 
* Citace upload on Tuesday, Jan 28, 2020
 
  
=== Author First Pass paper ===
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[[WormBase-Caltech_Weekly_Calls_July_2021|July]]
* AFP resent to Database
 
* Automated descriptions about to be sent
 
* SObA, write for micropub? One micropub on SObA and another on comparative SObA
 
  
=== Noctua/GO-CAM ===
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[[WormBase-Caltech_Weekly_Calls_August_2021|August]]
* New version of the Noctua form released next week
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* Imports from WormBase?
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[[WormBase-Caltech_Weekly_Calls_September_2021|September]]
** Big push in coming months will be to pull in all manual annotations from WB into Noctua (on track)
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** Need to work on annotation history on back end
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** May have face-to-face meeting in Pasadena
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== October 14, 2021 ==
 +
 
 +
=== WormBase HD YouTube channel has ads ===
 +
* Is there a way to turn them off? Seems like we cannot remove them entirely
 +
 
 +
=== Form headers and footers no longer updating ===
 +
* WS version number falls out of date; Juancarlos will manually update
 +
 
 +
== October 21, 2021 ==
 +
 
 +
=== Next Upload ===
 +
* Probably before the Holidays, will discuss again next conference call
 +
 
 +
=== Chen webinar ===
 +
* Good to have an in person meeting
 +
* Paul will check if it can be done remote, too
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* Raymond, Valerio (community curation), Wen (Simple mine)
 +
 
 +
=== Alliance literature group ===
 +
* Ceri stepping down from literature group leader, as she took on the Blue Team PO role
 +
* Who can replace her?
 +
* Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO

Latest revision as of 15:53, 21 October 2021

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings

2020 Meetings

2021 Meetings

January

February

March

April

May

June

July

August

September


October 14, 2021

WormBase HD YouTube channel has ads

  • Is there a way to turn them off? Seems like we cannot remove them entirely

Form headers and footers no longer updating

  • WS version number falls out of date; Juancarlos will manually update

October 21, 2021

Next Upload

  • Probably before the Holidays, will discuss again next conference call

Chen webinar

  • Good to have an in person meeting
  • Paul will check if it can be done remote, too
  • Raymond, Valerio (community curation), Wen (Simple mine)

Alliance literature group

  • Ceri stepping down from literature group leader, as she took on the Blue Team PO role
  • Who can replace her?
  • Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO