Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_2018|2018 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2018|2018 Meetings]]
  
 +
[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
  
GoToMeeting link: https://www.gotomeet.me/wormbase1
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[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
  
 +
= 2021 Meetings =
  
= 2019 Meetings =
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[[WormBase-Caltech_Weekly_Calls_January_2021|January]]
  
[[WormBase-Caltech_Weekly_Calls_January_2019|January]]
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[[WormBase-Caltech_Weekly_Calls_February_2021|February]]
  
[[WormBase-Caltech_Weekly_Calls_February_2019|February]]
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[[WormBase-Caltech_Weekly_Calls_March_2021|March]]
  
[[WormBase-Caltech_Weekly_Calls_March_2019|March]]
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[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
  
[[WormBase-Caltech_Weekly_Calls_April_2019|April]]
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[[WormBase-Caltech_Weekly_Calls_May_2021|May]]
  
[[WormBase-Caltech_Weekly_Calls_May_2019|May]]
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[[WormBase-Caltech_Weekly_Calls_June_2021|June]]
  
[[WormBase-Caltech_Weekly_Calls_June_2019|June]]
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[[WormBase-Caltech_Weekly_Calls_July_2021|July]]
  
[[WormBase-Caltech_Weekly_Calls_July_2019|July]]
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[[WormBase-Caltech_Weekly_Calls_August_2021|August]]
  
[[WormBase-Caltech_Weekly_Calls_August_2019|August]]
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[[WormBase-Caltech_Weekly_Calls_September_2021|September]]
  
[[WormBase-Caltech_Weekly_Calls_September_2019|September]]
 
  
[[WormBase-Caltech_Weekly_Calls_October_2019|October]]
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== October 14, 2021 ==
  
 +
=== WormBase HD YouTube channel has ads ===
 +
* Is there a way to turn them off? Seems like we cannot remove them entirely
  
== November 7, 2019 ==
+
=== Form headers and footers no longer updating ===
 +
* WS version number falls out of date; Juancarlos will manually update
  
=== WS275 Citace upload ===
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== October 21, 2021 ==
* Maybe Nov 22 upload to Hinxton
 
* CIT curators upload to Spica on Tues Nov 19
 
  
=== ?Genotype class ===
+
=== Next Upload ===
* [https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?usp=sharing Working data model document]
+
* Probably before the Holidays, will discuss again next conference call
* Several classes have a "Genotype" tag with text entry
+
 
** Strain
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=== Chen webinar ===
** 2_point_data
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* Good to have an in person meeting
** Pos_neg_data
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* Paul will check if it can be done remote, too
** Multi_pt_data
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* Raymond, Valerio (community curation), Wen (Simple mine)
** RNAi
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** Phenotype_info
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=== Alliance literature group ===
** Mass_spec_experiment (no data as of WS273)
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* Ceri stepping down from literature group leader, as she took on the Blue Team PO role
** Condition
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* Who can replace her?
* Collecting all genotype text entries yields ~33,000 unique entries, with many different forms:
+
* Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO
** Species entries, like "Acrobeloides butschlii wild isolate" or "C. briggsae"
 
** Strain entries, like "BA17[fem-1(hc-17)]" or "BB21" or "BL1[pK08F4.7::K08F4.7::GFP; rol-6(+)]"
 
** Anonymous transgenes, like "BEC-1::GFP" or "CAM-1-GFP" or "Ex[Pnpr-9::unc-103(gf)]"
 
** Complex constructs, like "C56C10.9(gk5253[loxP + Pmyo-2::GFP::unc-54 3' UTR + Prps-27::neoR::unc-54 3' UTR + loxP]) II"
 
** Text descriptions, like "Control" or "WT" or "Control worms fed on HT115 containing the L4440 vector without insert" or "N.A."
 
** Bacterial genotypes, like "E. coli [argA, lysA, mcrA, mcrB, IN(rrnD-rrnE)1, lambda-, rcn14::Tn10(DE3 lysogen::lavUV5 promoter -T7 polymerase]"
 
** Including balancers, like "F26H9.8(ok2510) I/hT2 [bli-4(e937) let-?(q782) qIs48] (I;III)"
 
** Reference to parent strain, like "Parent strain is AG359"
 
** Referring to RNAi, like "Pglr-1::wrm-1(RNAi)" or "Phsp-6::gfp; phb-1(RNAi)"
 
** Referring to apparent null or loss of function alleles, like "Phsp-4::GFP(zcIs4); daf-2(-)" or "ced-10(lf)"
 

Latest revision as of 15:53, 21 October 2021

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings

2020 Meetings

2021 Meetings

January

February

March

April

May

June

July

August

September


October 14, 2021

WormBase HD YouTube channel has ads

  • Is there a way to turn them off? Seems like we cannot remove them entirely

Form headers and footers no longer updating

  • WS version number falls out of date; Juancarlos will manually update

October 21, 2021

Next Upload

  • Probably before the Holidays, will discuss again next conference call

Chen webinar

  • Good to have an in person meeting
  • Paul will check if it can be done remote, too
  • Raymond, Valerio (community curation), Wen (Simple mine)

Alliance literature group

  • Ceri stepping down from literature group leader, as she took on the Blue Team PO role
  • Who can replace her?
  • Writing requirements, user stories and tickets is SME or PO responsibility? Probably PO