Difference between revisions of "WormBase-Caltech Weekly Calls"

From WormBaseWiki
Jump to navigationJump to search
 
Line 19: Line 19:
 
[[WormBase-Caltech_Weekly_Calls_2018|2018 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2018|2018 Meetings]]
  
 +
[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
  
GoToMeeting link: https://www.gotomeet.me/wormbase1
+
[[WormBase-Caltech_Weekly_Calls_2020|2020 Meetings]]
  
 +
= 2021 Meetings =
  
 +
[[WormBase-Caltech_Weekly_Calls_January_2021|January]]
  
= 2019 Meetings =
+
[[WormBase-Caltech_Weekly_Calls_February_2021|February]]
  
 +
[[WormBase-Caltech_Weekly_Calls_March_2021|March]]
  
== January 3, 2019 ==
+
[[WormBase-Caltech_Weekly_Calls_April_2021|April]]
  
=== WS270 Citace upload ===
+
[[WormBase-Caltech_Weekly_Calls_May_2021|May]]
* Next Tuesday, Jan 8th, 10am Pacific
 
  
=== Gene descriptions ===
+
[[WormBase-Caltech_Weekly_Calls_June_2021|June]]
* Valerio generated new files to ignore/filter-out problematic genes
 
* Still need to validate new pipeline
 
* Barring any major issues, will submit new files for WS270 (can load old files if needed)
 
* Maybe should define a test set (random sample) to test each release? Already have a test set
 
  
=== Protege Tutorial ===
+
[[WormBase-Caltech_Weekly_Calls_July_2021|July]]
* Doodle poll open: https://doodle.com/poll/kn49rd3rggymn68g
 
* Please fill out poll if you are interested in attending; have responses from Kimberly and Gary S.
 
  
  
==January 11th, 2019==
 
  
===WB workshop at IWM 2019===
+
== August 5, 2021 ==
Here's a draft, need to finalize as Jan 15th is the deadline
 
<pre style="white-space: pre-wrap;
 
white-space: -moz-pre-wrap;
 
white-space: -pre-wrap;
 
white-space: -o-pre-wrap;
 
word-wrap: break-word">
 
Possible Title 1: Data in WormBase and how to query it
 
Possible Title 2: WormBase 2019 - Data, Tools and Community Curation
 
This workshop will be an interactive session with users in order to discuss the types of data in WormBase and how to query them using the right tools.  We will discuss recent changes to WormBase community annotation forms and how to use them to contribute data to WormBase.  We will also present updates to ParaSite, a portal to parasitic worm genomic data, and how to find cross-species data at the Alliance of Genome Research.
 
  
1:00 pm 
+
=== Proxy issue resolved ===
Keep your widgets open: a wealth of gene-related data on the gene page
+
* Not clear what the problem was, but Sibyl transferred to new machine and now it works
(This will be a quick walk-through of the gene page for orienting Users before we jump into the tools; can point to data related to Gene function, expression and disease models) - Ranjana Kishore
+
* Could be a firewall issue somewhere but it isn't clear
     
 
1:10 pm 
 
Use the right tool for the right data:
 
Get simple lists using SimpleMine - Wen Chen
 
Tissue enrichment analysis tools - Kimberly Van Auken
 
Tools for RNA seq data - Wen Chen
 
Get batch gene data using the WormBase Ontology Browser - Raymond Lee
 
Get the big picture: visualize annotations using the SOBA tool -Raymond Lee
 
     
 
1.50 pm  WormBase ParaSite: Exploring lots of genomes - Kevin Howe
 
  
2.00 pm  Find cross-species data at the Alliance of Genome Research - Chris Grove
+
=== Textpresso-Dev transfer ===
 
+
* Michael ordered hard drive
2.10 pm  Be a Community Curator: submit your data to WormBase - Daniela Raciti
+
* Working on transfer
 
+
* Do we need more backup? Have partial backup on AWS; will make complete
2.10-2.30pm. Open forum for questions
 
</pre>
 
 
 
=== Finalize Protege tutorial time ===
 
* Best final options:
 
** Wed, Jan 16th, 1pm Pacific/4pm Eastern
 
** Thurs, Jan 17th, 11am Pacific/2pm Eastern
 
** Thurs, Jan 17th, 1pm Pacific/4pm Eastern
 
* Propose we go with Wed, Jan 16th, 1pm Pacific/4pm Eastern
 

Latest revision as of 16:03, 5 August 2021

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings

2020 Meetings

2021 Meetings

January

February

March

April

May

June

July


August 5, 2021

Proxy issue resolved

  • Not clear what the problem was, but Sibyl transferred to new machine and now it works
  • Could be a firewall issue somewhere but it isn't clear

Textpresso-Dev transfer

  • Michael ordered hard drive
  • Working on transfer
  • Do we need more backup? Have partial backup on AWS; will make complete