Difference between revisions of "WormBase-Caltech Weekly Calls"

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[[WormBase-Caltech_Weekly_Calls_2017|2017 Meetings]]
 
[[WormBase-Caltech_Weekly_Calls_2017|2017 Meetings]]
  
 +
[[WormBase-Caltech_Weekly_Calls_2018|2018 Meetings]]
  
GoToMeeting link: https://www.gotomeet.me/wormbase1
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[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
  
  
= 2018 Meetings =
 
  
[[WormBase-Caltech_Weekly_Calls_January_2018|January]]
 
  
[[WormBase-Caltech_Weekly_Calls_February_2018|February]]
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= 2020 Meetings =
  
 +
[[WormBase-Caltech_Weekly_Calls_January_2020|January]]
  
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[[WormBase-Caltech_Weekly_Calls_February_2020|February]]
  
== March 1, 2018 ==
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[[WormBase-Caltech_Weekly_Calls_March_2020|March]]
  
=== Elsevier paper-linking through Scholix ===
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[[WormBase-Caltech_Weekly_Calls_April_2020|April]]
* Bidirectional linking in place with ScienceDirect, Elsevier
 
** We link to their papers via DOI
 
** They link papers to WB
 
* Scholix
 
** http://www.scholix.org
 
** Scholix becoming a standard platform for linking to DB websites
 
** WB would need to establish Scholix integration?
 
** Daniela to check in with the Alliance to see what the other groups are doing
 
** Would Caltech library need to establish a pipeline or would WB do it?
 
* Would be good to revisit the paper page display for what is referenced in the paper
 
** GO terms are not showing currently
 
** Would be good to assess what else is not showing currently
 
  
=== Upstate NY Worm Meeting ===
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[[WormBase-Caltech_Weekly_Calls_May_2020|May]]
* Confirmation from organizers?
 
* Kimberly and Wen reached out to organizers about WB presentation
 
* 20-30 minute time slot for talk
 
** What are most important topics to bring up?
 
** Ask authors to submit sequence for sequence features, etc.
 
** Micropublications
 
*** Would be good to have answers to common questions about micropublications (how we get reviewers, etc.)
 
** Alliance of Genome Resources
 
** Help Desk/ Online chat service
 
* Organizers want WB to have table at meeting
 
* Meeting in Syracuse
 
  
=== Midwest Worm Meeting ===
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[[WormBase-Caltech_Weekly_Calls_June_2020|June]]
* Organizers asked for $50-$100 sponsorship
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 +
[[WormBase-Caltech_Weekly_Calls_July_2020|July]]
 +
 
 +
 
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==August 6th, 2020==
 +
===Experimental conditions data flow into Alliance===
 +
*Experimental conditions in disease annotations: WB has inducers (used to recapitulate the disease condition) and modifiers (a modifier can ameliorate, exacerbate, or have no effect, on the disease condition)
 +
*We use the WB Molecule CV for Inducers and Modifiers in disease annotation
 +
*Experimental conditions in phenotype annotations: are free text (captured in remarks); will probably need to formalize later on
 +
*So for data flow into Alliance:
 +
**In the short term we will load the Molecule CV into the Alliance (Ranjana and Michael P. will work on this)
 +
**Groups will switch to using common data model that works for all and common ontology/ontologies in the near future.

Latest revision as of 23:18, 5 August 2020

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings



2020 Meetings

January

February

March

April

May

June

July


August 6th, 2020

Experimental conditions data flow into Alliance

  • Experimental conditions in disease annotations: WB has inducers (used to recapitulate the disease condition) and modifiers (a modifier can ameliorate, exacerbate, or have no effect, on the disease condition)
  • We use the WB Molecule CV for Inducers and Modifiers in disease annotation
  • Experimental conditions in phenotype annotations: are free text (captured in remarks); will probably need to formalize later on
  • So for data flow into Alliance:
    • In the short term we will load the Molecule CV into the Alliance (Ranjana and Michael P. will work on this)
    • Groups will switch to using common data model that works for all and common ontology/ontologies in the near future.