Difference between revisions of "WormBase-Caltech Weekly Calls"

From WormBaseWiki
Jump to navigationJump to search
Line 36: Line 36:
  
 
[[WormBase-Caltech_Weekly_Calls_May_2022|May]]
 
[[WormBase-Caltech_Weekly_Calls_May_2022|May]]
 
= March 10, 2022 =
 
 
== Update on Biocyc linking from WormBase (Kimberly) ==
 
*
 
== Wormicloud for Alliance (Valerio/Jae) ==
 
*
 
== Wormicloud Improvement (Jae) ==
 
*
 
== Apologies: Stavros (attending ISB 1st UK-Local Biocuration Conference) ==
 
*
 
  
 
= April 28, 2022 =
 
= April 28, 2022 =

Revision as of 17:48, 12 May 2022

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings

2020 Meetings

2021 Meetings

2022 Meetings

January

February

March

April

May

April 28, 2022

WormBase

  • WB grant report

Alliance Migration

  • Discussion of what features are commonly used in the Caltech paper editor or otherwise wrt papers
  • Discussion of what features are commonly used in the curation status form

May 12, 2022

Subcellular localization field

  • WB has 2 separate free text fields to capture anatomical and subcellular localization statements but obviously the boundaries are fuzzy, see the example below where the statement belongs to both- there are many examples.

“miR-228 is expressed in the germline and preferentially localizes to the nuclear periphery.”

  • Other MODs do not make such distinction.
  • Daniela is asking the group advice to see if there is any objection in merging the 2 fields and slot the paragraph descriptions in the ExpressionExperimentStatement in LinkML.
ExpressionExperimentStatement:

    is_a: EntityStatement

    description: >-

      Free-text describing some aspect(s) of a gene's expression, particularly

      nuanced information that is not readily captured in annotations.

      This statement's scope is limited to the associated ExpressionExperiment.

    notes: >-

      Inherits: statement_subject, statement_type, statement_text, references.

    slot_usage:

      statement_subject:

        range: ExpressionExperiment