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| − | == November 4 2021 == | + | == December 16 2021 == |
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| − | === Migrating Paper Pipeline to Alliance === | + | === tm variation - gene associations === |
| − | *Meeting abstracts | + | *Not all tm variation - gene associations are in the nightly geneace dump |
| − | **Continuing to review what we have and standardize bibliographic info before we migrate
| + | *We need to retrieve the remainder from WS |
| − | **QC checks highlight some older abstracts with little-to-no data - propose to invalidate these so we don't migrate poor quality paper data to the Alliance
| + | *WS updates to postgres have apparently not been working for some time; script for downloading WS is not working |
| − | **We can always respond to individual requests to add old meeting abstracts if they arise
| + | *We need a better way to get the WS updates |
| − | | + | *Query WS on spica? automatically generate files from queries of WS on spica? |
| − | | + | *Future proof: when should we start thinking about querying the Alliance? |
| − | == November 11 2021 ==
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| − | | |
| − | === WS284 upload dates for Caltech ===
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| − | * When are files due for the Caltech group?
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| − | | |
| − | ===Minutes===
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| − | *WS284 upload-Better to upload before the holidays or in Jan 2022 | |
| − | *Wen will contact Paul D/Hinxton to find out when the WS284 models will be released
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| − | | |
| − | | |
| − | == November 18 2021 ==
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| − | Proposal for upgrading tanzendra/mangolassi computing resources
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| − | 1. Move them to Chen. (done)
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| − | monitor stability of network
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| − | | |
| − | Old hardware and out of support OS (Ubuntu 14.04)
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| − | | |
| − | 2. Establish a development environment for Dockerizing services (curation OA, other web forms, postgres DB)
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| − | (use Valerio's local server/desktop)
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| − | | |
| − | 3. Establish a local file server for storage and download access (PDFs, dump files)
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| − | | |
| − | 4. Run dockerized services from AWS
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| − | | |
| − | 5. Continuous development and integration locally -> AWS
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| − | | |
| − | ===Commercial antibodies===
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| − | * Daniela contacted ZFIN and FlyBase. ZFIN does curate commercial antibodies only if found in publications. Waiting for FlyBase feedback (Sian out).
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| − | * TODO: Contact TAIR and see if they including commercial antibodies and if they charge companies (Daniela sent a message on slack). Tanya: We have not charged for placing the links but have strongly encouraged a corporate subscription for the two companies.
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| − | * This can be an Alliance project. Need to contact companies and see who is interested (need to have a price in mind for that). | |
| − | * Can pilot text mining for commercial antibodies | |
| − | * GeneCards charges for inclusion of commercial reagents on their website: "Companies that wish to provide deep links to their products (e.g. reagents, assays, antibodies, clones, etc) in the Services and other relevant sections of GeneCards, should contact sales@lifemapsc.com." From https://www.genecards.org/Guide/FAQ | |
