Difference between revisions of "WormBase-Caltech Weekly Calls"
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[[WormBase-Caltech_Weekly_Calls_March_2021|March]] | [[WormBase-Caltech_Weekly_Calls_March_2021|March]] | ||
+ | [[WormBase-Caltech_Weekly_Calls_April_2021|April]] | ||
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− | === | + | == May 13, 2021 == |
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− | + | === Textpresso supplement === | |
+ | * Due Monday | ||
+ | * Michael working with Paul S | ||
− | === | + | === AWS credits === |
− | * Michael | + | * Michael and Valerio were awarded AWS credits, more than they can use |
− | * | + | * Maybe they can be repurposed |
− | + | * Valerio will play around with AWS to determine the best/cheapest configuration before migrating to the Alliance | |
− | * | ||
− | === | + | === Automated gene descriptions === |
− | * | + | * Will the Alliance ever accommodate non-elegans worm species? Can we port over the computed/derived descriptions for non-elegans species to the Alliance? |
− | * | + | * Maybe have clade-specific descriptions based on the popular model (worms based on C. elegans); may be provided in MOD portal page(s) |
+ | * May be the focus of an Alliance supplement | ||
+ | * We want a flexible pipeline that can be configured depending on availability of data (e.g. protein domains) | ||
− | === | + | === IWM 2021 WB Workshop === |
− | * | + | * Scheduled for June 22, 2021 |
− | + | * Session begins at 8:30am Pacific / 11:30am Eastern / 4:30pm UK | |
− | + | * Workshop runs for 90 minutes: 4 15-minute talks followed by 30 minute Q&A session | |
− | + | * Here is the submitted workshop schedule: | |
− | + | 11:30 am (EDT) Magdalena Zarowiecki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase | |
− | + | 11:45 am (EDT) Chris Grove, California Institute of Technology, Researching transcriptional regulation using WormBase transcription factors, TF binding sites and the modENCODE data | |
− | + | 12:00 pm (EDT) Ranjana Kishore, California Institute of Technology, Comparative genomics and disease research using Alliance of Genome Resources | |
− | * | + | 12:15 pm (EDT) Daniela Raciti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline |
− | + | 12:30 pm (EDT) Chris Grove, California Institute of Technology, Open Discussion / Q & A | |
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Revision as of 18:31, 13 May 2021
Contents
Previous Years
2021 Meetings
May 13, 2021
Textpresso supplement
- Due Monday
- Michael working with Paul S
AWS credits
- Michael and Valerio were awarded AWS credits, more than they can use
- Maybe they can be repurposed
- Valerio will play around with AWS to determine the best/cheapest configuration before migrating to the Alliance
Automated gene descriptions
- Will the Alliance ever accommodate non-elegans worm species? Can we port over the computed/derived descriptions for non-elegans species to the Alliance?
- Maybe have clade-specific descriptions based on the popular model (worms based on C. elegans); may be provided in MOD portal page(s)
- May be the focus of an Alliance supplement
- We want a flexible pipeline that can be configured depending on availability of data (e.g. protein domains)
IWM 2021 WB Workshop
- Scheduled for June 22, 2021
- Session begins at 8:30am Pacific / 11:30am Eastern / 4:30pm UK
- Workshop runs for 90 minutes: 4 15-minute talks followed by 30 minute Q&A session
- Here is the submitted workshop schedule:
11:30 am (EDT) Magdalena Zarowiecki, EMBL-EBI, A whistle-stop tour of all the types of data you can find in WormBase 11:45 am (EDT) Chris Grove, California Institute of Technology, Researching transcriptional regulation using WormBase transcription factors, TF binding sites and the modENCODE data 12:00 pm (EDT) Ranjana Kishore, California Institute of Technology, Comparative genomics and disease research using Alliance of Genome Resources 12:15 pm (EDT) Daniela Raciti, California Institute of Technology, How can you contribute? Community curation and tools, and the author-first-pass (AFP) pipeline 12:30 pm (EDT) Chris Grove, California Institute of Technology, Open Discussion / Q & A