Difference between revisions of "WormBase-Caltech Weekly Calls"

From WormBaseWiki
Jump to navigationJump to search
Line 1: Line 1:
==June 11, 2009==
+
= Previous Years =
*Discussion of allele-paper connections
 
**Jolene has a Textpresso-based pipeline for identifying alleles in papers
 
**Alleles get associated with a paper if there is phenotypic or molecular data
 
**List of all alleles could possibly be passed on to Sanger for subsequent connection to papers
 
  
*Discussion of gene-paper connections
+
[[WormBase-Caltech_Weekly_Calls_2009|2009 Meetings]]
**What criteria should be used for associating genes with papers?
 
**Currently being associated manually by a curator during first-pass
 
**Could Textpresso be harnessed for this task?
 
**There are different evidences attached to gene-paper connections
 
**Genes associated with a paper via Textpresso searches could be presented to the first-pass curator for approval in the first-pass form
 
**Need to fix current abstract-gene associating script to include proteins (e.g. PIE-1)
 
  
**Incorporate a canned Textpresso query on WormBase object pages so users could look for additional info if they want
+
[[WormBase-Caltech_Weekly_Calls_2011|2011 Meetings]]
  
*Other gene-object connections
+
[[WormBase-Caltech_Weekly_Calls_2012|2012 Meetings]]
**Develop a canned query for all objects that should be associated with the gene page
+
 
 +
[[WormBase-Caltech_Weekly_Calls_2013|2013 Meetings]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_2014|2014 Meetings]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_2015|2015 Meetings]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_2016|2016 Meetings]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_2017|2017 Meetings]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_2018|2018 Meetings]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_2019|2019 Meetings]]
 +
 
 +
 
 +
GoToMeeting link: https://www.gotomeet.me/wormbase1
 +
 
 +
= 2020 Meetings =
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_January_2020|January]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_February_2020|February]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_March_2020|March]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_April_2020|April]]
 +
 
 +
[[WormBase-Caltech_Weekly_Calls_May_2020|May]]
 +
 
 +
 
 +
== June 4, 2020 ==
 +
 
 +
=== Citace (tentative) upload ===
 +
* CIT curators upload to citace on Tuesday, July 7th, 10am Pacific
 +
* Citace upload to Hinxton on Friday, July 10th
 +
 
 +
=== Caltech reopening ===
 +
* Paul looking to get plan approved
 +
* People that want to come to campus need to watch training video
 +
* Masks available in Paul's lab
 +
* Can have maximum of 3 people in WormBase rooms at a time; probably best to only allow one person per WB room
 +
** Could possibly have 2 people in big room (Church 64) as long as they stay at least 10 feet apart
 +
* Need to coordinate, maybe make a Google calendar to do so (also Slack)
 +
* Before and after you go to campus, you need to take your temperature and assess your symptoms (if any) and submit info on form
 +
* Also, need to submit who you were in contact with for contact tracing
 +
* Form is used all week, and hold on to it until asked to be submitted
 +
* If someone goes in to the office, they could print several forms for people to pick up in WB offices
 +
 
 +
=== Nameserver ===
 +
* Nameserver was down
 +
* CIT curators would still like to have a single form to interact with
 +
* Is it possible to create objects at Caltech and let a cronjob assign IDs via the nameserver? May not be a good idea
 +
* Still putting genotype and all info for a strain in the reason/why field in the nameserver
 +
* We plan to eventually connect strains to genotypes, but need model changes and curation effort to sort out
 +
* Hinxton is pulling in CGC strains, how often?
 +
* Caltech could possibly get a block of IDs
 +
 
 +
=== Alliance SimpleMine ===
 +
* Any updates? 3.1 feature freeze is tomorrow
 +
* Pending on PI decision; Paul S. will bring it up tomorrow on the Alliance PI call

Revision as of 00:09, 5 June 2020

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings

2019 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1

2020 Meetings

January

February

March

April

May


June 4, 2020

Citace (tentative) upload

  • CIT curators upload to citace on Tuesday, July 7th, 10am Pacific
  • Citace upload to Hinxton on Friday, July 10th

Caltech reopening

  • Paul looking to get plan approved
  • People that want to come to campus need to watch training video
  • Masks available in Paul's lab
  • Can have maximum of 3 people in WormBase rooms at a time; probably best to only allow one person per WB room
    • Could possibly have 2 people in big room (Church 64) as long as they stay at least 10 feet apart
  • Need to coordinate, maybe make a Google calendar to do so (also Slack)
  • Before and after you go to campus, you need to take your temperature and assess your symptoms (if any) and submit info on form
  • Also, need to submit who you were in contact with for contact tracing
  • Form is used all week, and hold on to it until asked to be submitted
  • If someone goes in to the office, they could print several forms for people to pick up in WB offices

Nameserver

  • Nameserver was down
  • CIT curators would still like to have a single form to interact with
  • Is it possible to create objects at Caltech and let a cronjob assign IDs via the nameserver? May not be a good idea
  • Still putting genotype and all info for a strain in the reason/why field in the nameserver
  • We plan to eventually connect strains to genotypes, but need model changes and curation effort to sort out
  • Hinxton is pulling in CGC strains, how often?
  • Caltech could possibly get a block of IDs

Alliance SimpleMine

  • Any updates? 3.1 feature freeze is tomorrow
  • Pending on PI decision; Paul S. will bring it up tomorrow on the Alliance PI call