Difference between revisions of "WormBase-Caltech Weekly Calls"
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=== ?Genotype class model === | === ?Genotype class model === | ||
* [https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?pli=1#bookmark=id.7r3e8pg19rd8 Proposal] | * [https://docs.google.com/document/d/19hP9r6BpPW3FSAeC_67FNyNq58NGp4eaXBT42Ch3gDE/edit?pli=1#bookmark=id.7r3e8pg19rd8 Proposal] | ||
+ | * Can aim to implement for WS277 but may have to wait until WS278 | ||
=== Genotype OA === | === Genotype OA === |
Revision as of 19:30, 13 February 2020
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2020 Meetings
February 6, 2020
Worcester Area Worm Meeting talk
- Confirmed for December 2020 or February 2021
Alaska software
- Code developed and maintained by Joseph, but not long term solution
- Raymond and Eduardo talked about taking it over
- Why have a web application vs. a command-line application?
- Wanted to make it easy, but also to capture meta data for WB
- Should/will find out from Joseph about how hard it is to maintain the software
- Maybe it could be taken over by Alliance, as RNA-Seq/Microarray meta data are getting harmonized
- Expression working group working with Brian Oliver to have GEO take in more structured meta data
- Array Express tried requiring more structured meta data, but authors stopped submitting
- May be possible to build a form that collects meta data while simultaneously submitting to GEO in parallel
February 13, 2020
Alliance Literature Group
- Held first meeting on Monday, February 10th
- Regular meetings will be on Tuesdays at 10am/1pm/6pm
- Representatives from each group will give a brief overview of their literature pipelines before the group gets into details about deliverables
- Question about centralized paper repository; group needs guidance from Alliance PIs on how to proceed
?Genotype class model
- Proposal
- Can aim to implement for WS277 but may have to wait until WS278
Genotype OA
- Will put documentation here
WB All-Hands Meeting
- Doodle poll
- Any thoughts at this point? Still need to discuss with Hinxton, Toronto.