Difference between revisions of "WormBase-Caltech Weekly Calls"

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* Raymond and Juancarlos have worked out a way to display top-slicing of the ontology (trimming to higher level nodes)
 
* Raymond and Juancarlos have worked out a way to display top-slicing of the ontology (trimming to higher level nodes)
 
* Needs a bit more clean up; will send around a URL when ready
 
* Needs a bit more clean up; will send around a URL when ready
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 +
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== February 21, 2019 ==
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=== SObA ===
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* SObA GO graph, with top slicing function. You can try it here <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi> by entering the name of your favorite gene.
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* specific genes, from simple to complex
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let-4 <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi?action=annotSummaryCytoscape&showControlsFlag=0&autocompleteValue=let-4%20(Caenorhabditis%20elegans,%20WB:WBGene00002282,%20-,%20C44H4.2,%20sym-5)>
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let-60 <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi?action=annotSummaryCytoscape&showControlsFlag=0&autocompleteValue=let-60%20(Caenorhabditis%20elegans,%20WB:WBGene00002335,%20-,%20ZK792.6,%20lin-34)>
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daf-2 <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi?action=annotSummaryCytoscape&showControlsFlag=0&autocompleteValue=daf-2%20(Caenorhabditis%20elegans,%20WB:WBGene00000898,%20-,%20Y55D5A.5)>

Revision as of 05:16, 21 February 2019

Previous Years

2009 Meetings

2011 Meetings

2012 Meetings

2013 Meetings

2014 Meetings

2015 Meetings

2016 Meetings

2017 Meetings

2018 Meetings


GoToMeeting link: https://www.gotomeet.me/wormbase1


2019 Meetings

January


February 7, 2019

Automation of curation

  • For paper-by-paper curators (vs. datatype-by-datatype) it's difficult to parse papers into data types
  • MGI and WB curate by datatype, so may have an easier time
  • All MODS still need paper triage

IWM workshop

  • Ranjana replied to Julie about a consolidated WormBase workshop; hasn't heard back

Site-specific outreach

  • Wen has been invited to small RNA meeting in Mexico in April; may go if they offer to pay (waiting to hear back)

SObA

  • Raymond and Juancarlos have worked out a way to display top-slicing of the ontology (trimming to higher level nodes)
  • Needs a bit more clean up; will send around a URL when ready


February 21, 2019

SObA

  • specific genes, from simple to complex

let-4 <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi?action=annotSummaryCytoscape&showControlsFlag=0&autocompleteValue=let-4%20(Caenorhabditis%20elegans,%20WB:WBGene00002282,%20-,%20C44H4.2,%20sym-5)>

let-60 <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi?action=annotSummaryCytoscape&showControlsFlag=0&autocompleteValue=let-60%20(Caenorhabditis%20elegans,%20WB:WBGene00002335,%20-,%20ZK792.6,%20lin-34)>

daf-2 <http://wobr2.caltech.edu/~raymond/cgi-bin/soba_biggo.cgi?action=annotSummaryCytoscape&showControlsFlag=0&autocompleteValue=daf-2%20(Caenorhabditis%20elegans,%20WB:WBGene00000898,%20-,%20Y55D5A.5)>