Difference between revisions of "WormBase-Caltech Weekly Calls"
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= 2019 Meetings = | = 2019 Meetings = | ||
| + | ==January 11th, 2019== | ||
| + | ===WB workshop at IWM 2019=== | ||
| + | Here's a draft, need to finalize as Jan 15th is the deadline | ||
| + | <pre style="white-space: pre-wrap; | ||
| + | white-space: -moz-pre-wrap; | ||
| + | white-space: -pre-wrap; | ||
| + | white-space: -o-pre-wrap; | ||
| + | word-wrap: break-word"> | ||
| + | Possible Title 1: Data in WormBase and how to query it | ||
| + | Possible Title 2: WormBase 2019 - Data, Tools and Community Curation | ||
| + | This workshop aims to give users an overview of the types of data in WormBase and how to query them using different tools. We will also present recent updates | ||
| + | to our community annotation forms where we have incorporated text-mining in order to improve ease of use of these forms. | ||
| + | |||
| + | 1:00 pm Keep your widgets open: a wealth of gene-related data on the gene page | ||
| + | Gene function, expression and disease models - Ranjana Kishore | ||
| + | |||
| + | 1:10 pm Use the right tool for the right data | ||
| + | Get simple lists using SimpleMine - Wen Chen | ||
| + | Tissue enrichment analysis tools - Kimberly Van Auken | ||
| + | Tools for RNA seq data - Wen Chen | ||
| + | Get batch gene data using the WormBase Ontology Browser - Raymond Lee | ||
| + | Get the big picture: visualize annotations using the SOBA tool -Raymond Lee | ||
| + | |||
| + | 1.50 pm WormBase ParaSite: Exploring lots of genomes - Kevin Howe | ||
| + | |||
| + | 2.00 pm Find cross-species data at the Alliance of Genome Research - Chris Grove | ||
| + | |||
| + | 2.10 pm Be a Community Curator: submit your data to WormBase - Daniela Raciti | ||
| + | |||
| + | 2.10-2.30pm. Open forum for questions | ||
| + | </pre> | ||
== January 3, 2019 == | == January 3, 2019 == | ||
Revision as of 00:29, 10 January 2019
Contents
Previous Years
GoToMeeting link: https://www.gotomeet.me/wormbase1
2019 Meetings
January 11th, 2019
WB workshop at IWM 2019
Here's a draft, need to finalize as Jan 15th is the deadline
Possible Title 1: Data in WormBase and how to query it
Possible Title 2: WormBase 2019 - Data, Tools and Community Curation
This workshop aims to give users an overview of the types of data in WormBase and how to query them using different tools. We will also present recent updates
to our community annotation forms where we have incorporated text-mining in order to improve ease of use of these forms.
1:00 pm Keep your widgets open: a wealth of gene-related data on the gene page
Gene function, expression and disease models - Ranjana Kishore
1:10 pm Use the right tool for the right data
Get simple lists using SimpleMine - Wen Chen
Tissue enrichment analysis tools - Kimberly Van Auken
Tools for RNA seq data - Wen Chen
Get batch gene data using the WormBase Ontology Browser - Raymond Lee
Get the big picture: visualize annotations using the SOBA tool -Raymond Lee
1.50 pm WormBase ParaSite: Exploring lots of genomes - Kevin Howe
2.00 pm Find cross-species data at the Alliance of Genome Research - Chris Grove
2.10 pm Be a Community Curator: submit your data to WormBase - Daniela Raciti
2.10-2.30pm. Open forum for questions
January 3, 2019
WS270 Citace upload
- Next Tuesday, Jan 8th, 10am Pacific
Gene descriptions
- Valerio generated new files to ignore/filter-out problematic genes
- Still need to validate new pipeline
- Barring any major issues, will submit new files for WS270 (can load old files if needed)
- Maybe should define a test set (random sample) to test each release? Already have a test set
Protege Tutorial
- Doodle poll open: https://doodle.com/poll/kn49rd3rggymn68g
- Please fill out poll if you are interested in attending; have responses from Kimberly and Gary S.
